Ss1.1-rssp25_n10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCTCGTCTCCAGTTCTCCAGTGTTCGCAGGTGAGCTCACCCACGGCCGCTGCTCAAGA TGGAGGCCATCAAGAAAAAGATGCAGATGCTGAAGTTGGACAAGGAGAATGCTCTGGATC GGGCAGAGCAAGCCGAAGCTGAGCAAAAGCAGGCAGAAGAGAGAAGTAAACAGCTGGAAG ATGAGCTGGCAGCCATGCAGAAGAAACTAAAAGGGACAGAGGATGAGCTGGACAAATATT CTGAAGCTCTGAAGGATGCCCAGGAGAAGCTGGAGCTGGCAGAGAAGAAAGCAGCTGATG CTGAGGCTGAGGTGGCCTCCTTGAACCGTAGGATCCAGCTGGTTGAAGAGGAGCTGGACC GCGCTCAAGAGCGCCTGGCCACTGCCCTGCAAAAGCTGGAGGAAGCTGAGAAAGCTGCTG ATGAGAGCGAGAGAGGTATGAAGGTCATTGAAAACCGAGCCTTAAAAGATGAGGAAAAAA TGGAACTCCAGGAAATCCAACTCAAAGAAGCTAAGCACATTGCAGAAGAGGCAGATAGGA AGTATGAAGAGGTGGCTCGTAAGTTGGTGATTATTGAGGGAGACTTGGAACGCACAGAGG AGCGAGCTGAGCTGGCAGAGTCTAAGTGTTCTGAGCTGGAGGAGGAGCTGAAGAATGTCA CCAACAACCTCAAGTCTCTTGAGGCTCAGGCCGAGAAGTACTCTCAAAAAGAAGACAAAT ATGAGGAAGAGATAAAGATTCTCACTGACAAACTCAAGGAGGCAGAGACCCGGGCCGAGT TTGCCGAGAGATCGGTAGCCAAGCTGGAAAAGACAATTGATGACTTGGAAGATGAGCTCT ATGCCCAGAAACTGAAGTACAAGGCCATTAGCGAGGAGCTGGACCACGCCCTCAATGACA TGACCTCTATATAATTATCAGCGTTTCTGCTCTGTTCTGGATCTGCCCCCTTTCTTCGGG GGAGCCCAACGCCCCATTCTGGCTCTGGATTCCATTTGGGTCAGCGTGGCTGATCCCCAA GGCATTAGGATGGGCGGGTGGGGGGCGCCACAAAGCAACTTATGTATTCTCTTCCACCCC TCACCCCAAATTAAAATGTTAAGCTGCCGGAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCTCGTCTCCAGTTCTCCAGTGTTCGCAGGTGAGCTCACCCACGGCCGCTGCTCAAGA TGGAGGCCATCAAGAAAAAGATGCAGATGCTGAAGTTGGACAAGGAGAATGCTCTGGATC GGGCAGAGCAAGCCGAAGCTGAGCAAAAGCAGGCAGAAGAGAGAAGTAAACAGCTGGAAG ATGAGCTGGCAGCCATGCAGAAGAAACTAAAAGGGACAGAGGATGAGCTGGACAAATATT CTGAAGCTCTGAAGGATGCCCAGGAGAAGCTGGAGCTGGCAGAGAAGAAAGCAGCTGATG CTGAGGCTGAGGTGGCCTCCTTGAACCGTAGGATCCAGCTGGTTGAAGAGGAGCTGGACC GCGCTCAAGAGCGCCTGGCCACTGCCCTGCAAAAGCTGGAGGAAGCTGAGAAAGCTGCTG ATGAGAGCGAGAGAGGTATGAAGGTCATTGAAAACCGAGCCTTAAAAGATGAGGAAAAAA TGGAACTCCAGGAAATCCAACTCAAAGAAGCTAAGCACATTGCAGAAGAGGCAGATAGGA AGTATGAAGAGGTGGCTCGTAAGTTGGTGATTATTGAGGGAGACTTGGAACGCACAGAGG AGCGAGCTGAGCTGGCAGAGTCTAAGTGTTCTGAGCTGGAGGAGGAGCTGAAGAATGTCA CCAACAACCTCAAGTCTCTTGAGGCTCAGGCCGAGAAGTACTCTCAAAAAGAAGACAAAT ATGAGGAAGAGATAAAGATTCTCACTGACAAACTCAAGGAGGCAGAGACCCGGGCCGAGT TTGCCGAGAGATCGGTAGCCAAGCTGGAAAAGACAATTGATGACTTGGAAGATGAGCTCT ATGCCCAGAAACTGAAGTACAAGGCCATTAGCGAGGAGCTGGACCACGCCCTCAATGACA TGACCTCTATATAATTATCAGCGTTTCTGCTCTGTTCTGGATCTGCCCCCTTTCTTCGGG GGAGCCCAACGCCCCATTCTGGCTCTGGATTCCATTTGGGTCAGCGTGGCTGATCCCCAA GGCATTAGGATGGGCGGGTGGGGGGCGCCACAAAGCAACTTATGTATTCTCTTCCACCCC TCACCCCAAATTAAAATGTTAAGCTGCCGGAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 171-289, + strand, RNAz p=0.60174 | |
| 316-433, + strand, RNAz p=0.573446 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 171-289, + strand, RNAz p=0.60174 | |
| 316-433, + strand, RNAz p=0.573446 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 171-292, gnl|bosTau2|chr10 (30885531-30885652) | |
| 171-292, gnl|Hg17|chr15 (61123276-61123397) | |
| 171-292, gnl|Mm7|chr9 (67079384-67079263) | |
| 300-433, gnl|bosTau2|chr10 (30898625-30898758) | |
| 300-433, gnl|canFam2|chr30 (30647026-30647180) | |
| 300-433, gnl|danRer3|chr18 (46365359-46365513) | |
| 300-433, gnl|dasNov1|scaffold_7454 (58860-59015) | |
| 300-433, gnl|echTel1|scaffold_288449 (565-719) | |
| 300-433, gnl|fr1|chrUn (201006527-201006678) | |
| 300-433, gnl|galGal2|chr10 (4961794-4961651) | |
| 300-433, gnl|hg17|chr15 (61136233-61136387) | |
| 300-433, gnl|Hg17|chr15 (61136237-61136370) | |
| 300-433, gnl|loxAfr1|scaffold_46717 (13836-13991) | |
| 300-433, gnl|mm7|chr9 (67067603-67067450) | |
| 300-433, gnl|Mm7|chr9 (67067597-67067464) | |
| 300-433, gnl|monDom2|scaffold_12 (50774535-50774381) | |
| 300-433, gnl|oryCun1|scaffold_183267 (44066-43912) | |
| 300-433, gnl|panTro1|chr16 (61592303-61592457) | |
| 300-433, gnl|rheMac2|chr7 (41442060-41442214) | |
| 300-433, gnl|rn3|chr8 (71364024-71363870) | |
| 300-433, gnl|tetNig1|chr5 (2575381-2575243) | |
| 300-433, gnl|xenTro1|scaffold_62 (1109650-1109793) | |
| 624-832, gnl|bosTau2|chr8 (17405407-17405612) | |
| 624-832, gnl|Hg17|chr3 (27649925-27650133) | |
| 624-832, gnl|Mm7|chr17 (20185838-20185630) | |
| 911-1112, gnl|bosTau2|chr3 (8280570-8280365) | |
| 911-1112, gnl|Hg17|chr1 (150953489-150953297) | |
| 911-1112, gnl|Mm7|chr3 (90222666-90222865) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 171-292, gnl|bosTau2|chr10 (30885531-30885652) | |
| 171-292, gnl|Hg17|chr15 (61123276-61123397) | |
| 171-292, gnl|Mm7|chr9 (67079384-67079263) | |
| 300-433, gnl|bosTau2|chr10 (30898625-30898758) | |
| 300-433, gnl|canFam2|chr30 (30647026-30647180) | |
| 300-433, gnl|danRer3|chr18 (46365359-46365513) | |
| 300-433, gnl|dasNov1|scaffold_7454 (58860-59015) | |
| 300-433, gnl|echTel1|scaffold_288449 (565-719) | |
| 300-433, gnl|fr1|chrUn (201006527-201006678) | |
| 300-433, gnl|galGal2|chr10 (4961794-4961651) | |
| 300-433, gnl|hg17|chr15 (61136233-61136387) | |
| 300-433, gnl|Hg17|chr15 (61136237-61136370) | |
| 300-433, gnl|loxAfr1|scaffold_46717 (13836-13991) | |
| 300-433, gnl|mm7|chr9 (67067603-67067450) | |
| 300-433, gnl|Mm7|chr9 (67067597-67067464) | |
| 300-433, gnl|monDom2|scaffold_12 (50774535-50774381) | |
| 300-433, gnl|oryCun1|scaffold_183267 (44066-43912) | |
| 300-433, gnl|panTro1|chr16 (61592303-61592457) | |
| 300-433, gnl|rheMac2|chr7 (41442060-41442214) | |
| 300-433, gnl|rn3|chr8 (71364024-71363870) | |
| 300-433, gnl|tetNig1|chr5 (2575381-2575243) | |
| 300-433, gnl|xenTro1|scaffold_62 (1109650-1109793) | |
| 624-832, gnl|bosTau2|chr8 (17405407-17405612) | |
| 624-832, gnl|Hg17|chr3 (27649925-27650133) | |
| 624-832, gnl|Mm7|chr17 (20185838-20185630) | |
| 911-1112, gnl|bosTau2|chr3 (8280570-8280365) | |
| 911-1112, gnl|Hg17|chr1 (150953489-150953297) | |
| 911-1112, gnl|Mm7|chr3 (90222666-90222865) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| ssp (5.01423) | |
| mas (1.68244) | |
| tbr (1.54178) | |
| ldo (1.35804) | |
| nep (1.28747) | |
| nms (1.28315) | |
| ste (0.676041) | |
| vin (0.665115) | |
| bfe (0.449573) | |
| ese (0.379507) | |
| eru (0.360144) | |
| eye (0.341006) | |
| col (0.195008) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fco (0.157208) | |
| isp (0.150376) | |
| cov (0.132153) | |
| ebs (0.118301) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ssp (5.01423) | |
| mas (1.68244) | |
| tbr (1.54178) | |
| ldo (1.35804) | |
| nep (1.28747) | |
| nms (1.28315) | |
| ste (0.676041) | |
| vin (0.665115) | |
| bfe (0.449573) | |
| ese (0.379507) | |
| eru (0.360144) | |
| eye (0.341006) | |
| col (0.195008) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fco (0.157208) | |
| isp (0.150376) | |
| cov (0.132153) | |
| ebs (0.118301) |