Non-Coding RNA Search

Ss1.1-rssp25_n11.5

Sequence:


               
               TCAACACAAAACATCCAGACTTTGCTGATGCTTGTGGGTTAATGAACAATAATATAGAGG
AACAAAGAAGAAACAGGCTAGCAAGAGAATTACCTTCAGCTGTATCACGAGACAAGGTCA
CATCTGGAGGTGGTGGGGTTGGAGATGGTGTTCAGGAACCAACAACAGGCAACTGGAGAG
GAATGCTGAAAACTTCAAAAGCTGAAGAGTTGCTAGCTGAGGAGAAATCAAAACCAATTC
CAATCATGCCCGCCAGTCCACAAAAAGGCCATGCTGTGAATTTGCTGGATGTGCCAGTTC
CTGTTGCACGAAAACTATCTGCCCGTGAACAGAGAGATTGTGAGGTTATTGAACGACTCA
TCAAGTCGTATTTTCTTATTGTCAGAAAGAATATTCAAGACAGTGTACCAAAGGCAGTGA
TGCATTTTTTGGTTAATCATGTGAAAGATACTCTTCAGAGTGAGTTAGTAGGACAGCTGT
ATAAATCATCCTTATTGGATGATCTTCTGACAGAATCTGAAGACATGGCACAGCGCAGGA
AAGAAGCAGCTGATATGCTGAAGGCATTACAAGGAGCCAGTCAAATTATTGCTGAAATCC
GAGAGACTCATCTTTGGTGAAGAGAACTATATAATACCAAGACTTTGCTGACTTGCTAGT
TACTGCCTACTTGAGTAGAATTTTATTTATAAACCCCTGTGATTGCAATGGTATGAATCT
GCTCACGTGAAGACTGGCTATAAACTGAAAATTGTACGCTGTATTGCCGAACAAATCACA
CATTTAATTCAAATAATAAATAGCTGTTTCTAAAATTTCCTGGTATATATAAAATAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAACACAAAACATCCAGACTTTGCTGATGCTTGTGGGTTAATGAACAATAATATAGAGG
AACAAAGAAGAAACAGGCTAGCAAGAGAATTACCTTCAGCTGTATCACGAGACAAGGTCA
CATCTGGAGGTGGTGGGGTTGGAGATGGTGTTCAGGAACCAACAACAGGCAACTGGAGAG
GAATGCTGAAAACTTCAAAAGCTGAAGAGTTGCTAGCTGAGGAGAAATCAAAACCAATTC
CAATCATGCCCGCCAGTCCACAAAAAGGCCATGCTGTGAATTTGCTGGATGTGCCAGTTC
CTGTTGCACGAAAACTATCTGCCCGTGAACAGAGAGATTGTGAGGTTATTGAACGACTCA
TCAAGTCGTATTTTCTTATTGTCAGAAAGAATATTCAAGACAGTGTACCAAAGGCAGTGA
TGCATTTTTTGGTTAATCATGTGAAAGATACTCTTCAGAGTGAGTTAGTAGGACAGCTGT
ATAAATCATCCTTATTGGATGATCTTCTGACAGAATCTGAAGACATGGCACAGCGCAGGA
AAGAAGCAGCTGATATGCTGAAGGCATTACAAGGAGCCAGTCAAATTATTGCTGAAATCC
GAGAGACTCATCTTTGGTGAAGAGAACTATATAATACCAAGACTTTGCTGACTTGCTAGT
TACTGCCTACTTGAGTAGAATTTTATTTATAAACCCCTGTGATTGCAATGGTATGAATCT
GCTCACGTGAAGACTGGCTATAAACTGAAAATTGTACGCTGTATTGCCGAACAAATCACA
CATTTAATTCAAATAATAAATAGCTGTTTCTAAAATTTCCTGGTATATATAAAATAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|4545141|gb|AAD22412.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|4545141|gb|AAD22412.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               559-670, - strand, RNAz p=0.684313

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               559-670, - strand, RNAz p=0.684313

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               121-293, gnl|bosTau2|chr5 (47032849-47032677)
               

               
               121-293, gnl|Hg17|chr12 (32784269-32784441)
               

               
               121-293, gnl|Mm7|chr16 (15860131-15859959)
               


               
               559-836, gnl|bosTau2|chr5 (47031853-47031576)
               

               
               559-836, gnl|Hg17|chr12 (32787550-32787835)
               

               
               559-836, gnl|Mm7|chr16 (15857405-15857150)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               121-293, gnl|bosTau2|chr5 (47032849-47032677)
               

               
               121-293, gnl|Hg17|chr12 (32784269-32784441)
               

               
               121-293, gnl|Mm7|chr16 (15860131-15859959)
               


               
               559-836, gnl|bosTau2|chr5 (47031853-47031576)
               

               
               559-836, gnl|Hg17|chr12 (32787550-32787835)
               

               
               559-836, gnl|Mm7|chr16 (15857405-15857150)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               fco (0.471624)
               

               
               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               ssp (0.271039)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               mga (0.160205)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               ssp (0.271039)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               mga (0.160205)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	121-293, gnl\|bosTau2\|chr5 (47032849-47032677)
	121-293, gnl\|Hg17\|chr12 (32784269-32784441)
	121-293, gnl\|Mm7\|chr16 (15860131-15859959)

	559-836, gnl\|bosTau2\|chr5 (47031853-47031576)
	559-836, gnl\|Hg17\|chr12 (32787550-32787835)
	559-836, gnl\|Mm7\|chr16 (15857405-15857150)

	fco (0.471624)
	vin (0.332557)
	bfe (0.299715)
	liv (0.292569)
	lin (0.291206)
	ssp (0.271039)
	sug (0.254582)
	mgp (0.230681)
	spc (0.226732)
	nms (0.213858)
	jej (0.197844)
	aor (0.195274)
	mga (0.160205)
	ova (0.129132)
	thg (0.126791)
	tra (0.123092)
	med (0.116252)
	ecc (0.115035)
	jca (0.11396)