Ss1.1-rssp26_e8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCAAGATCCAAAGAAAAAAATTTATTTACAATAGAGAATTTTATTTGAAACATGCATTT TCTTTTCTTTTTTAAACAAATCAGCAAATGCGGATCAAGTTTACACTCCTTAAGGCAAGA GTTCCTTTGCAAGCTGTACATGATCATAGTAAATCCAAAAGCGCTCACCCTGGAAACTCA TGTACAAAGGGCAAGGCCAAGGTCAGCGATTTGTCTTTTATTAGCGAATCAGACAATCTC CCTGATACAGGAACTCTGAGGTCAACTTGCTATGAATTATACTAGGAAAATGCAAACCAA TAGCAAGAAATTCTGATCGTCTCCTTAGTACTGCATACAATCAAATCAACTTTATTTAGA AAGGAAATACAGTAGTGCATACGAAAAAGTGAAAACAGAATCTGCCCACGTCACCGGAGG GGACAGCAGTGTGCCGACGGTCATATTGCACGCAACGGTCAAGTCCAAACATTTGGTTCA AAGTTAGCTTTTCCCCATTTTGGCAATCAGTTCATCGCAAATCTTGGTGAGTTCTTCTAT CTCTTTATTCTTCTGCTCCAGCGTTCTTTCCAGAGCATCCACTCGCAGCTGCTCCTTCCG CAGACTGGCCTGGTAGGCAGCTTGCTCCTGCTGGGCCTTGCCTCGGACCTGGGCGATCTC GGCGTTGGCCCTGTCCAGCTTCTCCTCTGCATGCACCTTCAGGGCCTGGTACCTCTGCTC CTCCTTCTTCACCCGGGACAGGTACTCCTGTGCACATTTCTTCAGCACCTCTTCATTCTT TCGGAAACCCTCCAGGACCTCCTTCATCTTCTCGTATCTCCTGAAGAGATCGGCCAGAGA CTTCTCCACTGAGTTCAGGTCGGCCAGGGCTTGTTCCTTCTCCAGGACCAGCTGCTGGAC CGTCTGGTGGGAGACTGACTTCTCCCTCTGTTCATCCTCTATCATTTGGGCGATGGTCTT CTCATACTCGGCCACTATTTTCCTCATTTCCATCACTTCCCGTCTGCTTTCTTCATATTT ATCTTTCCACTCTGAGACCTCTCTCTCCTTGGTTATGATCTCTGCCCTGGCGATCTGGAG TGCAGAGTCCAGATCCGGCGTCTGGAACAGAAGGCCCGCAGGTTTCTCCACCTCGGCCGA CCCGATGCGGGAGTACAAGGCTGTTTTGGAGATGGAGACATCTGTTGGGTGAGTAGCTTC TCTAATTTCAATCACTTCTGACGCGGTGCCCAAGGCCATGGCCTCCAGCTCTTTCTGGGA GGATTTCTCTGGCACCTGCAAGTGTGGCTCCTGGTTGGGGGCCAGCCCTCGTGTGACGGG ATGCTGGATCTTAGCCCCGGCGTTCACAAGAGCTTCCGTCTCCTCGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCAAGATCCAAAGAAAAAAATTTATTTACAATAGAGAATTTTATTTGAAACATGCATTT TCTTTTCTTTTTTAAACAAATCAGCAAATGCGGATCAAGTTTACACTCCTTAAGGCAAGA GTTCCTTTGCAAGCTGTACATGATCATAGTAAATCCAAAAGCGCTCACCCTGGAAACTCA TGTACAAAGGGCAAGGCCAAGGTCAGCGATTTGTCTTTTATTAGCGAATCAGACAATCTC CCTGATACAGGAACTCTGAGGTCAACTTGCTATGAATTATACTAGGAAAATGCAAACCAA TAGCAAGAAATTCTGATCGTCTCCTTAGTACTGCATACAATCAAATCAACTTTATTTAGA AAGGAAATACAGTAGTGCATACGAAAAAGTGAAAACAGAATCTGCCCACGTCACCGGAGG GGACAGCAGTGTGCCGACGGTCATATTGCACGCAACGGTCAAGTCCAAACATTTGGTTCA AAGTTAGCTTTTCCCCATTTTGGCAATCAGTTCATCGCAAATCTTGGTGAGTTCTTCTAT CTCTTTATTCTTCTGCTCCAGCGTTCTTTCCAGAGCATCCACTCGCAGCTGCTCCTTCCG CAGACTGGCCTGGTAGGCAGCTTGCTCCTGCTGGGCCTTGCCTCGGACCTGGGCGATCTC GGCGTTGGCCCTGTCCAGCTTCTCCTCTGCATGCACCTTCAGGGCCTGGTACCTCTGCTC CTCCTTCTTCACCCGGGACAGGTACTCCTGTGCACATTTCTTCAGCACCTCTTCATTCTT TCGGAAACCCTCCAGGACCTCCTTCATCTTCTCGTATCTCCTGAAGAGATCGGCCAGAGA CTTCTCCACTGAGTTCAGGTCGGCCAGGGCTTGTTCCTTCTCCAGGACCAGCTGCTGGAC CGTCTGGTGGGAGACTGACTTCTCCCTCTGTTCATCCTCTATCATTTGGGCGATGGTCTT CTCATACTCGGCCACTATTTTCCTCATTTCCATCACTTCCCGTCTGCTTTCTTCATATTT ATCTTTCCACTCTGAGACCTCTCTCTCCTTGGTTATGATCTCTGCCCTGGCGATCTGGAG TGCAGAGTCCAGATCCGGCGTCTGGAACAGAAGGCCCGCAGGTTTCTCCACCTCGGCCGA CCCGATGCGGGAGTACAAGGCTGTTTTGGAGATGGAGACATCTGTTGGGTGAGTAGCTTC TCTAATTTCAATCACTTCTGACGCGGTGCCCAAGGCCATGGCCTCCAGCTCTTTCTGGGA GGATTTCTCTGGCACCTGCAAGTGTGGCTCCTGGTTGGGGGCCAGCCCTCGTGTGACGGG ATGCTGGATCTTAGCCCCGGCGTTCACAAGAGCTTCCGTCTCCTCGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 40-147, - strand, RNAz p=0.573737 | |
| 823-940, + strand, RNAz p=0.653482 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-147, - strand, RNAz p=0.573737 | |
| 823-940, + strand, RNAz p=0.653482 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AF220152, - |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-551, gnl|bosTau2|chr26 (29597744-29598306) | |
| 1-551, gnl|Hg17|chr10 (124004045-124003494) | |
| 1-551, gnl|Mm7|chr7 (127084421-127083889) | |
| 778-940, gnl|bosTau2|chr26 (29602472-29602634) | |
| 778-940, gnl|canFam2|chr28 (34939250-34939426) | |
| 778-940, gnl|danRer3|chrNA (112585459-112585289) | |
| 778-940, gnl|dasNov1|scaffold_169499 (1215-1039) | |
| 778-940, gnl|echTel1|scaffold_299888 (299-123) | |
| 778-940, gnl|fr1|chrUn (204682690-204682519) | |
| 778-940, gnl|galGal2|chr6 (30233480-30233647) | |
| 778-940, gnl|hg17|chr10 (123998144-123998320) | |
| 778-940, gnl|Hg17|chr10 (123998308-123998146) | |
| 778-940, gnl|loxAfr1|scaffold_103459 (8546-8370) | |
| 778-940, gnl|mm7|chr7 (127078798-127078987) | |
| 778-940, gnl|Mm7|chr7 (127078962-127078800) | |
| 778-940, gnl|monDom2|scaffold_14 (37092374-37092198) | |
| 778-940, gnl|oryCun1|scaffold_193812 (81687-81863) | |
| 778-940, gnl|panTro1|chr8 (126324418-126324594) | |
| 778-940, gnl|rheMac2|chr9 (121865019-121865195) | |
| 778-940, gnl|rn3|chr1 (190229114-190229303) | |
| 778-940, gnl|tetNig1|chr17 (2967249-2967422) | |
| 778-940, gnl|xenTro1|scaffold_677 (236392-236222) | |
| 1060-1203, gnl|bosTau2|chr26 (29610467-29610610) | |
| 1060-1203, gnl|Hg17|chr10 (123987043-123986900) | |
| 1060-1203, gnl|Mm7|chr7 (127070970-127070827) | |
| 1204-1368, gnl|bosTau2|chr26 (29619812-29619976) | |
| 1204-1368, gnl|Hg17|chr10 (123977513-123977349) | |
| 1204-1368, gnl|Mm7|chr7 (127061938-127061774) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-551, gnl|bosTau2|chr26 (29597744-29598306) | |
| 1-551, gnl|Hg17|chr10 (124004045-124003494) | |
| 1-551, gnl|Mm7|chr7 (127084421-127083889) | |
| 778-940, gnl|bosTau2|chr26 (29602472-29602634) | |
| 778-940, gnl|canFam2|chr28 (34939250-34939426) | |
| 778-940, gnl|danRer3|chrNA (112585459-112585289) | |
| 778-940, gnl|dasNov1|scaffold_169499 (1215-1039) | |
| 778-940, gnl|echTel1|scaffold_299888 (299-123) | |
| 778-940, gnl|fr1|chrUn (204682690-204682519) | |
| 778-940, gnl|galGal2|chr6 (30233480-30233647) | |
| 778-940, gnl|hg17|chr10 (123998144-123998320) | |
| 778-940, gnl|Hg17|chr10 (123998308-123998146) | |
| 778-940, gnl|loxAfr1|scaffold_103459 (8546-8370) | |
| 778-940, gnl|mm7|chr7 (127078798-127078987) | |
| 778-940, gnl|Mm7|chr7 (127078962-127078800) | |
| 778-940, gnl|monDom2|scaffold_14 (37092374-37092198) | |
| 778-940, gnl|oryCun1|scaffold_193812 (81687-81863) | |
| 778-940, gnl|panTro1|chr8 (126324418-126324594) | |
| 778-940, gnl|rheMac2|chr9 (121865019-121865195) | |
| 778-940, gnl|rn3|chr1 (190229114-190229303) | |
| 778-940, gnl|tetNig1|chr17 (2967249-2967422) | |
| 778-940, gnl|xenTro1|scaffold_677 (236392-236222) | |
| 1060-1203, gnl|bosTau2|chr26 (29610467-29610610) | |
| 1060-1203, gnl|Hg17|chr10 (123987043-123986900) | |
| 1060-1203, gnl|Mm7|chr7 (127070970-127070827) | |
| 1204-1368, gnl|bosTau2|chr26 (29619812-29619976) | |
| 1204-1368, gnl|Hg17|chr10 (123977513-123977349) | |
| 1204-1368, gnl|Mm7|chr7 (127061938-127061774) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| lyg (0.399308) | |
| aor (0.390549) | |
| pgl (0.35545) | |
| vin (0.332557) | |
| tbr (0.308356) | |
| ski (0.29347) | |
| ldo (0.291008) | |
| ssp (0.271039) | |
| ret (0.257467) | |
| cbe (0.239234) | |
| nms (0.213858) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| sin (0.174948) | |
| rec (0.17307) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| che (0.136314) | |
| ute (0.132784) | |
| sug (0.127291) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| spc (0.113366) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lyg (0.399308) | |
| aor (0.390549) | |
| pgl (0.35545) | |
| vin (0.332557) | |
| tbr (0.308356) | |
| ski (0.29347) | |
| ldo (0.291008) | |
| ssp (0.271039) | |
| ret (0.257467) | |
| cbe (0.239234) | |
| nms (0.213858) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| sin (0.174948) | |
| rec (0.17307) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| che (0.136314) | |
| ute (0.132784) | |
| sug (0.127291) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| spc (0.113366) |