Ss1.1-rssp26_l20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCAGTCGGGCGCTGAGTGGTTCTTCGGATCATGTCTGGTGGCTCCGCGGATTATAACAG AGAACATGGCGGCCCAGAGGGAATGGACCCCGATGGTGTCATCGAGAGCAACTGGAATGA GATTGTTGATAACTTTGACGATATGAATTTAAAGGAGTCTCTTCTTCGGGGCATCTATGC TTACGGTTTTGAGAAGCCATCAGCTATTCAGCAGAGAGCTATTATTCCTTGTATTAAAGG GTATGATGTGATTGCTCAAGCTCAGTCAGGTACTGGCAAGACAGCCACATTTGCTATTTC CATCCTGCAACAGTTGGAGATTGAGTTCAAGGAGACCCAAGCACTAGTATTGGCCCCCAC CAGAGAACTGGCTCAACAGATCCAAAAGGTAATTCTGGCACTTGGAGACTATATGGGAGC AACTTGTCATGCCTGCATTGGTGGGACAAATGTTCGGAATGAAATGCAGAAACTGCAGGC TGAAGCACCACATATTGTTGTTGGTACACCAGGGAGAGTGTTTGATATGTTAAACAGAAG ATATCTTTCTCCAAAATGGATCAAAATGTTTGTTTTGGATGAAGCAGATGAAATGCTGAG CCGAGGGTTTAAGGATCAAATCTATGAGATTTTCCAAAAATTAAATACAAGTATTCAGGT TGTGTTGCTTTCTGCCACAATGCCAACGGATGTATTGGAAGTGACCAAAAAGTTCATGAG AGATCCAATTCGAATTCTGGTGAAAAAGGAAGAATTGACCCTTGAAGGAATCAAACAGTT TTATATTAATGTTGAAAGAGAGGAATGGAAGTTGGATACACTTTGTGACTTGTATGAGAC ACTGACGATTACACAGGCTGTGATTTTTCTCAATACAAGGCGCAAGGTGGACTGGCTTAC TGAGAAAATGCATGCCAGGGACTTTACAGTTTCTGCTCTGCATGGTGACATGGACCAGAA GGAAAGAGATGTTATCATGAGGGAATTCCGATCAGGGTCAAGCCGTGTTCTGATCACTAC TGACTTGTTGGCTCGTGGGATTGATGTGCAACAAGTATCATTGGTTATAAACTATGACCT ACCTACCAATCGTGAAAACTATATTCACAGAATTGGCAGAGGGGGTCGATTTGGGAGGAA AGGTGTGGCTATAAACTTTGTTACTGAAGAAGACAAGAGGATTCTTCGTGACATTGAGAC TTTCTACAATACTACAGTGGAGGAAATGCCAATGAATGTGGCTGACCTTATTTAATTCCT GGGATGAGATAGTTTTGAATGCAGTGCTCGCTGTTGCTGAATAGGCGATCACAACGTGCA TTGTGCTTCTTTCTTTGGGAATATTTGAATCTTGTCTCAATGCTCATAACGGATCAGAAA TACAGATTTTGATAGCAAAGCGACATTTAGTCGTGAGCTCTTGTGAGGAAAGTCATTGGC TTCATCCTCTTTAGAGTTAGACTGTTGGGGTTGGGTATAAAAAAGATGGGGTCTGTAAAA TCTTACTTTCTTAGAAATTTATTTCCTAGTTCTGTAGAAATGGTTGTATTAGATGTTCTC TATCATTTAATAATATACTTGTGGACTAAAAGATATAAGTGCTGTATAAAATCAGCCAAT TATGTTAAACTAGCATACCTGCCTTTATTGTGTTTGTCAGTAGCCTGAATTAGAAAGGCC TTTAAAATTGATTTTTTTTTTCTAGAAAGCATTTGAATGCATTGTTTGGTATTGTATTTA ATTATTCAATAAAGTATTTAATTAGTGCTAAGTGTGAACTGGACCCTGTTGCTAAGCCCC AGCAAGCAATCATATCCTAGGTAGGGTTAAACCCCCAGTAAAATTGCCATATTGCACATG TCTTAATGAAGTTTAAATGTTAAATAAATTGTATATTCACTTTAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCAGTCGGGCGCTGAGTGGTTCTTCGGATCATGTCTGGTGGCTCCGCGGATTATAACAG AGAACATGGCGGCCCAGAGGGAATGGACCCCGATGGTGTCATCGAGAGCAACTGGAATGA GATTGTTGATAACTTTGACGATATGAATTTAAAGGAGTCTCTTCTTCGGGGCATCTATGC TTACGGTTTTGAGAAGCCATCAGCTATTCAGCAGAGAGCTATTATTCCTTGTATTAAAGG GTATGATGTGATTGCTCAAGCTCAGTCAGGTACTGGCAAGACAGCCACATTTGCTATTTC CATCCTGCAACAGTTGGAGATTGAGTTCAAGGAGACCCAAGCACTAGTATTGGCCCCCAC CAGAGAACTGGCTCAACAGATCCAAAAGGTAATTCTGGCACTTGGAGACTATATGGGAGC AACTTGTCATGCCTGCATTGGTGGGACAAATGTTCGGAATGAAATGCAGAAACTGCAGGC TGAAGCACCACATATTGTTGTTGGTACACCAGGGAGAGTGTTTGATATGTTAAACAGAAG ATATCTTTCTCCAAAATGGATCAAAATGTTTGTTTTGGATGAAGCAGATGAAATGCTGAG CCGAGGGTTTAAGGATCAAATCTATGAGATTTTCCAAAAATTAAATACAAGTATTCAGGT TGTGTTGCTTTCTGCCACAATGCCAACGGATGTATTGGAAGTGACCAAAAAGTTCATGAG AGATCCAATTCGAATTCTGGTGAAAAAGGAAGAATTGACCCTTGAAGGAATCAAACAGTT TTATATTAATGTTGAAAGAGAGGAATGGAAGTTGGATACACTTTGTGACTTGTATGAGAC ACTGACGATTACACAGGCTGTGATTTTTCTCAATACAAGGCGCAAGGTGGACTGGCTTAC TGAGAAAATGCATGCCAGGGACTTTACAGTTTCTGCTCTGCATGGTGACATGGACCAGAA GGAAAGAGATGTTATCATGAGGGAATTCCGATCAGGGTCAAGCCGTGTTCTGATCACTAC TGACTTGTTGGCTCGTGGGATTGATGTGCAACAAGTATCATTGGTTATAAACTATGACCT ACCTACCAATCGTGAAAACTATATTCACAGAATTGGCAGAGGGGGTCGATTTGGGAGGAA AGGTGTGGCTATAAACTTTGTTACTGAAGAAGACAAGAGGATTCTTCGTGACATTGAGAC TTTCTACAATACTACAGTGGAGGAAATGCCAATGAATGTGGCTGACCTTATTTAATTCCT GGGATGAGATAGTTTTGAATGCAGTGCTCGCTGTTGCTGAATAGGCGATCACAACGTGCA TTGTGCTTCTTTCTTTGGGAATATTTGAATCTTGTCTCAATGCTCATAACGGATCAGAAA TACAGATTTTGATAGCAAAGCGACATTTAGTCGTGAGCTCTTGTGAGGAAAGTCATTGGC TTCATCCTCTTTAGAGTTAGACTGTTGGGGTTGGGTATAAAAAAGATGGGGTCTGTAAAA TCTTACTTTCTTAGAAATTTATTTCCTAGTTCTGTAGAAATGGTTGTATTAGATGTTCTC TATCATTTAATAATATACTTGTGGACTAAAAGATATAAGTGCTGTATAAAATCAGCCAAT TATGTTAAACTAGCATACCTGCCTTTATTGTGTTTGTCAGTAGCCTGAATTAGAAAGGCC TTTAAAATTGATTTTTTTTTTCTAGAAAGCATTTGAATGCATTGTTTGGTATTGTATTTA ATTATTCAATAAAGTATTTAATTAGTGCTAAGTGTGAACTGGACCCTGTTGCTAAGCCCC AGCAAGCAATCATATCCTAGGTAGGGTTAAACCCCCAGTAAAATTGCCATATTGCACATG TCTTAATGAAGTTTAAATGTTAAATAAATTGTATATTCACTTTAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1249-1488, + strand, RNAz p=0.905077 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1249-1488, + strand, RNAz p=0.905077 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 3-239, gnl|bosTau2|chr13 (8384486-8384250) | |
| 3-239, gnl|Hg17|chrX (52745999-52745763) | |
| 3-239, gnl|Mm7|chr16 (22766384-22768605) | |
| 377-543, gnl|bosTau2|chr19 (13277828-13277994) | |
| 377-543, gnl|canFam2|chr9 (27576201-27576316) | |
| 377-543, gnl|canFam2|chr9 (27576201-27576313) | |
| 377-543, gnl|canFam2|chr9 (27576196-27576318) | |
| 377-543, gnl|danRer3|chrNA (102492531-102492416) | |
| 377-543, gnl|danRer3|chrNA (102492531-102492419) | |
| 377-543, gnl|danRer3|chrNA (102492531-102492414) | |
| 377-543, gnl|dasNov1|scaffold_21264 (11142-11032) | |
| 377-543, gnl|dasNov1|scaffold_21264 (11142-11035) | |
| 377-543, gnl|dasNov1|scaffold_21264 (11147-11030) | |
| 377-543, gnl|echTel1|scaffold_284367 (38053-38166) | |
| 377-543, gnl|echTel1|scaffold_284367 (38053-38163) | |
| 377-543, gnl|echTel1|scaffold_284367 (38048-38168) | |
| 377-543, gnl|fr1|chrUn (98206471-98206586) | |
| 377-543, gnl|fr1|chrUn (98206471-98206583) | |
| 377-543, gnl|fr1|chrUn (98206471-98206588) | |
| 377-543, gnl|galGal2|chr9 (15487358-15487473) | |
| 377-543, gnl|galGal2|chr9 (15487358-15487470) | |
| 377-543, gnl|galGal2|chr9 (15487353-15487475) | |
| 377-543, gnl|hg17|chr10 (93886933-93887055) | |
| 377-543, gnl|hg17|chr12 (51833672-51833786) | |
| 377-543, gnl|hg17|chr13 (28071318-28071430) | |
| 377-543, gnl|Hg17|chr17 (7420563-7420729) | |
| 377-543, gnl|loxAfr1|scaffold_2728 (64795-64907) | |
| 377-543, gnl|loxAfr1|scaffold_2728 (64790-64912) | |
| 377-543, gnl|loxAfr1|scaffold_9795 (4496-4610) | |
| 377-543, gnl|mm7|chr1 (60955214-60955329) | |
| 377-543, gnl|mm7|chr1 (60955214-60955326) | |
| 377-543, gnl|mm7|chr1 (60955209-60955331) | |
| 377-543, gnl|Mm7|chr11 (69750823-69750657) | |
| 377-543, gnl|monDom2|scaffold_15 (10884794-10884909) | |
| 377-543, gnl|monDom2|scaffold_15 (10884794-10884906) | |
| 377-543, gnl|monDom2|scaffold_15 (10884789-10884911) | |
| 377-543, gnl|oryCun1|scaffold_50175 (6277-6392) | |
| 377-543, gnl|oryCun1|scaffold_50175 (6277-6389) | |
| 377-543, gnl|oryCun1|scaffold_50175 (6272-6394) | |
| 377-543, gnl|panTro1|chr10 (53068408-53068522) | |
| 377-543, gnl|panTro1|chr14 (27255052-27255164) | |
| 377-543, gnl|panTro1|chr8 (95616098-95616220) | |
| 377-543, gnl|rheMac2|chr10 (49522395-49522280) | |
| 377-543, gnl|rheMac2|chr10 (49522395-49522295) | |
| 377-543, gnl|rheMac2|chr9 (91623745-91623867) | |
| 377-543, gnl|rn3|chr6 (79626788-79626903) | |
| 377-543, gnl|rn3|chr6 (79626788-79626900) | |
| 377-543, gnl|rn3|chr6 (79626783-79626905) | |
| 377-543, gnl|tetNig1|chrUn_random (4499090-4499205) | |
| 377-543, gnl|tetNig1|chrUn_random (4499090-4499202) | |
| 377-543, gnl|tetNig1|chrUn_random (4499085-4499207) | |
| 377-543, gnl|xenTro1|scaffold_1853 (12183-12298) | |
| 377-543, gnl|xenTro1|scaffold_1853 (12183-12295) | |
| 377-543, gnl|xenTro1|scaffold_1853 (12178-12300) | |
| 549-660, gnl|bosTau2|chr1 (49528710-49528821) | |
| 549-660, gnl|Hg17|chr3 (187986655-187986766) | |
| 549-660, gnl|Mm7|chr16 (22768855-22768966) | |
| 670-1923, gnl|bosTau2|chr13 (8384103-8382869) | |
| 670-1923, gnl|Hg17|chrX (52745347-52744125) | |
| 670-1923, gnl|Mm7|chr16 (22769212-22772567) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-239, gnl|bosTau2|chr13 (8384486-8384250) | |
| 3-239, gnl|Hg17|chrX (52745999-52745763) | |
| 3-239, gnl|Mm7|chr16 (22766384-22768605) | |
| 377-543, gnl|bosTau2|chr19 (13277828-13277994) | |
| 377-543, gnl|canFam2|chr9 (27576201-27576316) | |
| 377-543, gnl|canFam2|chr9 (27576201-27576313) | |
| 377-543, gnl|canFam2|chr9 (27576196-27576318) | |
| 377-543, gnl|danRer3|chrNA (102492531-102492416) | |
| 377-543, gnl|danRer3|chrNA (102492531-102492419) | |
| 377-543, gnl|danRer3|chrNA (102492531-102492414) | |
| 377-543, gnl|dasNov1|scaffold_21264 (11142-11032) | |
| 377-543, gnl|dasNov1|scaffold_21264 (11142-11035) | |
| 377-543, gnl|dasNov1|scaffold_21264 (11147-11030) | |
| 377-543, gnl|echTel1|scaffold_284367 (38053-38166) | |
| 377-543, gnl|echTel1|scaffold_284367 (38053-38163) | |
| 377-543, gnl|echTel1|scaffold_284367 (38048-38168) | |
| 377-543, gnl|fr1|chrUn (98206471-98206586) | |
| 377-543, gnl|fr1|chrUn (98206471-98206583) | |
| 377-543, gnl|fr1|chrUn (98206471-98206588) | |
| 377-543, gnl|galGal2|chr9 (15487358-15487473) | |
| 377-543, gnl|galGal2|chr9 (15487358-15487470) | |
| 377-543, gnl|galGal2|chr9 (15487353-15487475) | |
| 377-543, gnl|hg17|chr10 (93886933-93887055) | |
| 377-543, gnl|hg17|chr12 (51833672-51833786) | |
| 377-543, gnl|hg17|chr13 (28071318-28071430) | |
| 377-543, gnl|Hg17|chr17 (7420563-7420729) | |
| 377-543, gnl|loxAfr1|scaffold_2728 (64795-64907) | |
| 377-543, gnl|loxAfr1|scaffold_2728 (64790-64912) | |
| 377-543, gnl|loxAfr1|scaffold_9795 (4496-4610) | |
| 377-543, gnl|mm7|chr1 (60955214-60955329) | |
| 377-543, gnl|mm7|chr1 (60955214-60955326) | |
| 377-543, gnl|mm7|chr1 (60955209-60955331) | |
| 377-543, gnl|Mm7|chr11 (69750823-69750657) | |
| 377-543, gnl|monDom2|scaffold_15 (10884794-10884909) | |
| 377-543, gnl|monDom2|scaffold_15 (10884794-10884906) | |
| 377-543, gnl|monDom2|scaffold_15 (10884789-10884911) | |
| 377-543, gnl|oryCun1|scaffold_50175 (6277-6392) | |
| 377-543, gnl|oryCun1|scaffold_50175 (6277-6389) | |
| 377-543, gnl|oryCun1|scaffold_50175 (6272-6394) | |
| 377-543, gnl|panTro1|chr10 (53068408-53068522) | |
| 377-543, gnl|panTro1|chr14 (27255052-27255164) | |
| 377-543, gnl|panTro1|chr8 (95616098-95616220) | |
| 377-543, gnl|rheMac2|chr10 (49522395-49522280) | |
| 377-543, gnl|rheMac2|chr10 (49522395-49522295) | |
| 377-543, gnl|rheMac2|chr9 (91623745-91623867) | |
| 377-543, gnl|rn3|chr6 (79626788-79626903) | |
| 377-543, gnl|rn3|chr6 (79626788-79626900) | |
| 377-543, gnl|rn3|chr6 (79626783-79626905) | |
| 377-543, gnl|tetNig1|chrUn_random (4499090-4499205) | |
| 377-543, gnl|tetNig1|chrUn_random (4499090-4499202) | |
| 377-543, gnl|tetNig1|chrUn_random (4499085-4499207) | |
| 377-543, gnl|xenTro1|scaffold_1853 (12183-12298) | |
| 377-543, gnl|xenTro1|scaffold_1853 (12183-12295) | |
| 377-543, gnl|xenTro1|scaffold_1853 (12178-12300) | |
| 549-660, gnl|bosTau2|chr1 (49528710-49528821) | |
| 549-660, gnl|Hg17|chr3 (187986655-187986766) | |
| 549-660, gnl|Mm7|chr16 (22768855-22768966) | |
| 670-1923, gnl|bosTau2|chr13 (8384103-8382869) | |
| 670-1923, gnl|Hg17|chrX (52745347-52744125) | |
| 670-1923, gnl|Mm7|chr16 (22769212-22772567) |
| Expressed library(ies): 83 entry(ies) | More info |
| Expressed library(ies): 83 entry(ies) | Help | Less info |
| tbr (5.70459) | |
| ste (3.78583) | |
| liv (3.51083) | |
| sug (3.30957) | |
| fco (3.30137) | |
| kid (3.24338) | |
| ldo (3.00708) | |
| spl (2.86369) | |
| cbe (2.63158) | |
| bla (2.61129) | |
| thg (2.53582) | |
| mgp (2.30681) | |
| vin (1.99534) | |
| isp (1.95489) | |
| sin (1.92442) | |
| lin (1.74723) | |
| tra (1.72329) | |
| spc (1.70049) | |
| ova (1.67872) | |
| fce (1.62955) | |
| ret (1.5448) | |
| eye (1.53453) | |
| sme (1.52718) | |
| lun (1.50489) | |
| bfe (1.49858) | |
| cty (1.45712) | |
| hea (1.43149) | |
| pgl (1.4218) | |
| rec (1.38456) | |
| cbl (1.37757) | |
| ssp (1.3552) | |
| eje (1.28484) | |
| lyg (1.19792) | |
| mcp (1.19454) | |
| fat (1.17942) | |
| ski (1.17388) | |
| aor (1.17165) | |
| lnt (1.13847) | |
| gul (1.06553) | |
| ecc (1.03532) | |
| pro (1.02407) | |
| nmm (0.929615) | |
| sag (0.913576) | |
| nje (0.8296) | |
| ebs (0.828108) | |
| col (0.780031) | |
| nlu (0.766724) | |
| nep (0.7357) | |
| eru (0.720288) | |
| clu (0.717875) | |
| pan (0.707881) | |
| fbs (0.701385) | |
| med (0.697512) | |
| nco (0.646935) | |
| mga (0.64082) | |
| ese (0.632511) | |
| mas (0.630915) | |
| tes (0.623441) | |
| eep (0.61282) | |
| sto (0.539471) | |
| ill (0.526778) | |
| jej (0.494609) | |
| ece (0.45861) | |
| hlv (0.417769) | |
| amn (0.417711) | |
| fcc (0.39557) | |
| cmu (0.372787) | |
| mgm (0.360685) | |
| hyp (0.285673) | |
| pty (0.285429) | |
| nca (0.273748) | |
| ute (0.265569) | |
| nms (0.213858) | |
| fli (0.202881) | |
| ton (0.1755) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| ctl (0.153069) | |
| che (0.136314) | |
| pla (0.133672) | |
| cov (0.132153) | |
| cly (0.120642) | |
| jca (0.11396) |
| Expressed library(ies): 83 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (5.70459) | |
| ste (3.78583) | |
| liv (3.51083) | |
| sug (3.30957) | |
| fco (3.30137) | |
| kid (3.24338) | |
| ldo (3.00708) | |
| spl (2.86369) | |
| cbe (2.63158) | |
| bla (2.61129) | |
| thg (2.53582) | |
| mgp (2.30681) | |
| vin (1.99534) | |
| isp (1.95489) | |
| sin (1.92442) | |
| lin (1.74723) | |
| tra (1.72329) | |
| spc (1.70049) | |
| ova (1.67872) | |
| fce (1.62955) | |
| ret (1.5448) | |
| eye (1.53453) | |
| sme (1.52718) | |
| lun (1.50489) | |
| bfe (1.49858) | |
| cty (1.45712) | |
| hea (1.43149) | |
| pgl (1.4218) | |
| rec (1.38456) | |
| cbl (1.37757) | |
| ssp (1.3552) | |
| eje (1.28484) | |
| lyg (1.19792) | |
| mcp (1.19454) | |
| fat (1.17942) | |
| ski (1.17388) | |
| aor (1.17165) | |
| lnt (1.13847) | |
| gul (1.06553) | |
| ecc (1.03532) | |
| pro (1.02407) | |
| nmm (0.929615) | |
| sag (0.913576) | |
| nje (0.8296) | |
| ebs (0.828108) | |
| col (0.780031) | |
| nlu (0.766724) | |
| nep (0.7357) | |
| eru (0.720288) | |
| clu (0.717875) | |
| pan (0.707881) | |
| fbs (0.701385) | |
| med (0.697512) | |
| nco (0.646935) | |
| mga (0.64082) | |
| ese (0.632511) | |
| mas (0.630915) | |
| tes (0.623441) | |
| eep (0.61282) | |
| sto (0.539471) | |
| ill (0.526778) | |
| jej (0.494609) | |
| ece (0.45861) | |
| hlv (0.417769) | |
| amn (0.417711) | |
| fcc (0.39557) | |
| cmu (0.372787) | |
| mgm (0.360685) | |
| hyp (0.285673) | |
| pty (0.285429) | |
| nca (0.273748) | |
| ute (0.265569) | |
| nms (0.213858) | |
| fli (0.202881) | |
| ton (0.1755) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| ctl (0.153069) | |
| che (0.136314) | |
| pla (0.133672) | |
| cov (0.132153) | |
| cly (0.120642) | |
| jca (0.11396) |