Non-Coding RNA Search

Ss1.1-rssp26_m5.5

Sequence:


               
               GTCACCAAACAGGTACAAGAGGTCTATAAGTGGGAAGAAGCTGTGCTCCTCGTGCGGGCT
CCCGTTGGGTAAAGGAGCTGCCATGATCATCGAGACCCTCAGTCTCTATTTCCACATCCA
GTGCTTCGGGTGTGGAATTTGCAAAGGACAGCTTGGAGATGCAGTGAGCGGGACGGATGT
TAGGATTCGCAATGGTCTTCTAAATTGTAACGATTGCTACATGCGATCCAGAAGTGCTGG
CCAACCCACAACCTTGTGATGTGGTTTTCAGGCTTCCAGATCACTCACCGTTTCCTTACT
GAGGGTGTCCGCGGGCAATTCCCTGTTTAACAACATCCCCAATTCAGGGGATCCTCAGCA
TTCATCTAATTTCTGAAAGGCTATCCTAAAAGATGGTATCTGTTCTTTTGCAGCACAGTG
TTTGTGTTTTTCCTGGTTTCTTTTTCTTTTTTTTGAATTTTTTAATTTTTTTTTTGGCAT
TTGCACAACATATACAGAAAAAATACTGAATTGTGATGATCCTGAATAGTTTTTTAAAAA
GGTCTTAGTGTGGTCACACAGGCTTACCGTTTAAGATTTGTTATTCTCTTTGAGAGTTAA
TGAGATTCATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCACCAAACAGGTACAAGAGGTCTATAAGTGGGAAGAAGCTGTGCTCCTCGTGCGGGCT
CCCGTTGGGTAAAGGAGCTGCCATGATCATCGAGACCCTCAGTCTCTATTTCCACATCCA
GTGCTTCGGGTGTGGAATTTGCAAAGGACAGCTTGGAGATGCAGTGAGCGGGACGGATGT
TAGGATTCGCAATGGTCTTCTAAATTGTAACGATTGCTACATGCGATCCAGAAGTGCTGG
CCAACCCACAACCTTGTGATGTGGTTTTCAGGCTTCCAGATCACTCACCGTTTCCTTACT
GAGGGTGTCCGCGGGCAATTCCCTGTTTAACAACATCCCCAATTCAGGGGATCCTCAGCA
TTCATCTAATTTCTGAAAGGCTATCCTAAAAGATGGTATCTGTTCTTTTGCAGCACAGTG
TTTGTGTTTTTCCTGGTTTCTTTTTCTTTTTTTTGAATTTTTTAATTTTTTTTTTGGCAT
TTGCACAACATATACAGAAAAAATACTGAATTGTGATGATCCTGAATAGTTTTTTAAAAA
GGTCTTAGTGTGGTCACACAGGCTTACCGTTTAAGATTTGTTATTCTCTTTGAGAGTTAA
TGAGATTCATGA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               20-126, gnl|bosTau2|chr6 (31034140-31034246)
               

               
               20-126, gnl|Hg17|chr4 (41532470-41532576)
               

               
               20-126, gnl|Mm7|chr5 (66399867-66399973)
               


               
               234-612, gnl|bosTau2|chr6 (31042185-31042547)
               

               
               234-612, gnl|Hg17|chr4 (41540105-41540463)
               

               
               234-612, gnl|Mm7|chr5 (66409759-66410128)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-126, gnl|bosTau2|chr6 (31034140-31034246)
               

               
               20-126, gnl|Hg17|chr4 (41532470-41532576)
               

               
               20-126, gnl|Mm7|chr5 (66399867-66399973)
               


               
               234-612, gnl|bosTau2|chr6 (31042185-31042547)
               

               
               234-612, gnl|Hg17|chr4 (41540105-41540463)
               

               
               234-612, gnl|Mm7|chr5 (66409759-66410128)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               gul (0.177588)
               

               
               ton (0.1755)
               

               
               ssp (0.13552)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               ssp (0.13552)

	20-126, gnl\|bosTau2\|chr6 (31034140-31034246)
	20-126, gnl\|Hg17\|chr4 (41532470-41532576)
	20-126, gnl\|Mm7\|chr5 (66399867-66399973)

	234-612, gnl\|bosTau2\|chr6 (31042185-31042547)
	234-612, gnl\|Hg17\|chr4 (41540105-41540463)
	234-612, gnl\|Mm7\|chr5 (66409759-66410128)