Ss1.1-rssp26_n8.5
|
GTGCAGCTTCCATGGCAGAGGAGGAAGTGTCTGCAGTCACCACAGCAGCAGCTCAGTTCA
CCAAACTTCGCCGAGGCATGGATGTTTTTATTCCCAGTAATTGATGATGGCATTTGGGAT
GATTGAAGTTAAAGGTAATGTTTTACGGCTACCATTGGCTCTGCTCCCCCTCTCTCCCTG
CCCAAAAGAAGAGTATGTGCTCATGGGGGTGGATTCTGGGTTTGCAGCTGGAGGTGGAAT
GCATGGAAGAGCCTAATCACCTTGATGTGGACCTGGAGACCCGGATCCCTGTCATCAATA
AGGTGGATGGTACTTTGCTGGTGGGTGAGGATGCCCCTCGCCGGGCTGAACTGGAGATGT
GGTTACAGGGTCATCCAGAGTTCGCTGTCGATCCCCGATTTCTAGCGGTGAGTGGCAGTT
CCATCCAGCAAGATTTAAAGTCATTCCCTTGGTACTGAAGCTTTGTTAATAAGGGGCCTG
AGTATCAGTATCAAATCCTTGCTCTTACTTCAGCATCAGAATGCTTCAACCAGCTACATC
CAGCCTTTCCTCCTCCCCATTACCATCAAGCCTCATCTGAGTATGCTTGTTTTGCTCCTC
CCCACAGTGCGTGTCGTAGTTCAGTTTATGTGCAGGGCAGGCTCCCTCTTCCTGGTTTGA
GCGCTCTGTCCGCGCGAAGCCCCTGACCCAGCGTCCCAGCAACGAGAATCCTTCCAACCC
TAAAGTAGCAGAGGCTTTTACTTTCCCACCTTTTCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTGCAGCTTCCATGGCAGAGGAGGAAGTGTCTGCAGTCACCACAGCAGCAGCTCAGTTCA
CCAAACTTCGCCGAGGCATGGATGTTTTTATTCCCAGTAATTGATGATGGCATTTGGGAT
GATTGAAGTTAAAGGTAATGTTTTACGGCTACCATTGGCTCTGCTCCCCCTCTCTCCCTG
CCCAAAAGAAGAGTATGTGCTCATGGGGGTGGATTCTGGGTTTGCAGCTGGAGGTGGAAT
GCATGGAAGAGCCTAATCACCTTGATGTGGACCTGGAGACCCGGATCCCTGTCATCAATA
AGGTGGATGGTACTTTGCTGGTGGGTGAGGATGCCCCTCGCCGGGCTGAACTGGAGATGT
GGTTACAGGGTCATCCAGAGTTCGCTGTCGATCCCCGATTTCTAGCGGTGAGTGGCAGTT
CCATCCAGCAAGATTTAAAGTCATTCCCTTGGTACTGAAGCTTTGTTAATAAGGGGCCTG
AGTATCAGTATCAAATCCTTGCTCTTACTTCAGCATCAGAATGCTTCAACCAGCTACATC
CAGCCTTTCCTCCTCCCCATTACCATCAAGCCTCATCTGAGTATGCTTGTTTTGCTCCTC
CCCACAGTGCGTGTCGTAGTTCAGTTTATGTGCAGGGCAGGCTCCCTCTTCCTGGTTTGA
GCGCTCTGTCCGCGCGAAGCCCCTGACCCAGCGTCCCAGCAACGAGAATCCTTCCAACCC
TAAAGTAGCAGAGGCTTTTACTTTCCCACCTTTTCT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
153-296, + strand, RNAmicro p=0.956818 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
153-296, + strand, RNAmicro p=0.956818 |
|
82-466, gnl|bosTau2|chr10 (15924557-15924173) |
|
82-466, gnl|Hg17|chr14 (20929791-20929403) |
|
82-466, gnl|Mm7|chr14 (47536129-47535769) |
| |
|
599-756, gnl|bosTau2|chr10 (15919904-15919747) |
|
599-756, gnl|canFam2|chr15 (21436804-21437089) |
|
599-756, gnl|hg17|chr14 (20922414-20922858) |
|
599-756, gnl|Hg17|chr14 (20922651-20922500) |
|
599-756, gnl|loxAfr1|scaffold_19921 (20723-20304) |
|
599-756, gnl|mm7|chr14 (47531188-47531534) |
|
599-756, gnl|monDom2|scaffold_12 (29113433-29112876) |
|
599-756, gnl|oryCun1|scaffold_171282 (2819-2405) |
|
599-756, gnl|panTro1|chrUn_random (22223764-22224210) |
|
599-756, gnl|rheMac2|chr7 (84113596-84114035) |
|
599-756, gnl|rn3|chr15 (27657814-27658166) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
82-466, gnl|bosTau2|chr10 (15924557-15924173) |
|
82-466, gnl|Hg17|chr14 (20929791-20929403) |
|
82-466, gnl|Mm7|chr14 (47536129-47535769) |
| |
|
599-756, gnl|bosTau2|chr10 (15919904-15919747) |
|
599-756, gnl|canFam2|chr15 (21436804-21437089) |
|
599-756, gnl|hg17|chr14 (20922414-20922858) |
|
599-756, gnl|Hg17|chr14 (20922651-20922500) |
|
599-756, gnl|loxAfr1|scaffold_19921 (20723-20304) |
|
599-756, gnl|mm7|chr14 (47531188-47531534) |
|
599-756, gnl|monDom2|scaffold_12 (29113433-29112876) |
|
599-756, gnl|oryCun1|scaffold_171282 (2819-2405) |
|
599-756, gnl|panTro1|chrUn_random (22223764-22224210) |
|
599-756, gnl|rheMac2|chr7 (84113596-84114035) |
|
599-756, gnl|rn3|chr15 (27657814-27658166) |
|
pro (0.512033) |
|
fce (0.271592) |
|
cut (0.169924) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
eep (0.122564) |
|
pgl (0.118483) |
|
nbm (0.0993246) |
|
pro (0.512033) |
|
fce (0.271592) |
|
cut (0.169924) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
eep (0.122564) |
|
pgl (0.118483) |
|
nbm (0.0993246) |
