Non-Coding RNA Search

Ss1.1-rssp27_e20.5

Sequence:


               
               CAAGGAGAAGAAGGCCCTCCAGGAGGCCCACCAGCAGACCCTGGATGACCTGCAGGCAGA
AGAGGACAAAGTCAACACCCTGACCAAAGCTAAAACCAAGCTAGAGCAGCAAGTGGATGA
CCTTGAAGGGTCCTTGGAGCAAGAAAAGAAACTTCGCATGGACCTAGAGAGAGCCAAGAG
GAAACTGGAAGGTGACCTCAAGTTGGCACAAGAATCCACAATGGATATAGAAAATGACAA
ACAGCAACTTGATGAGAAACTCAAAAAGAAGGAGTTTGAAATGAGCAATCTGCAAAGCAA
GATTGAAGATGAACAGGCCCTTGCAATGCAGCTGCAGAAGAAGATCAAGGAGTTACAGGC
CCGCATTGAGGAGCTGGAGGAGGAGATCGAGGCAGAGCGGGCCTCCAGGGCCAAAGCAGA
GAAGCAGCGCTCCGACCTCTCCCGGGAACTGGGGGAGATCAGCGAGAGGCTGGAAGAAGC
TGGCGGGGCGACGTCAGCCCAGATTGAGATGAACAAGAAGCGCGAGGCTGAGTTCCAGAA
GATGCGCCGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGGAGAAGAAGGCCCTCCAGGAGGCCCACCAGCAGACCCTGGATGACCTGCAGGCAGA
AGAGGACAAAGTCAACACCCTGACCAAAGCTAAAACCAAGCTAGAGCAGCAAGTGGATGA
CCTTGAAGGGTCCTTGGAGCAAGAAAAGAAACTTCGCATGGACCTAGAGAGAGCCAAGAG
GAAACTGGAAGGTGACCTCAAGTTGGCACAAGAATCCACAATGGATATAGAAAATGACAA
ACAGCAACTTGATGAGAAACTCAAAAAGAAGGAGTTTGAAATGAGCAATCTGCAAAGCAA
GATTGAAGATGAACAGGCCCTTGCAATGCAGCTGCAGAAGAAGATCAAGGAGTTACAGGC
CCGCATTGAGGAGCTGGAGGAGGAGATCGAGGCAGAGCGGGCCTCCAGGGCCAAAGCAGA
GAAGCAGCGCTCCGACCTCTCCCGGGAACTGGGGGAGATCAGCGAGAGGCTGGAAGAAGC
TGGCGGGGCGACGTCAGCCCAGATTGAGATGAACAAGAAGCGCGAGGCTGAGTTCCAGAA
GATGCGCCGGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               356-514, + strand, RNAz p=0.879368

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               356-514, + strand, RNAz p=0.879368

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               122-268, gnl|bosTau2|chr19 (22380828-22380682)
               

               
               122-268, gnl|Hg17|chr17 (10164538-10164392)
               

               
               122-268, gnl|Mm7|chr11 (67436213-67436359)
               


               
               356-552, gnl|bosTau2|chr19 (22526091-22525895)
               

               
               356-552, gnl|Hg17|chr17 (10296375-10296179)
               

               
               356-552, gnl|Mm7|chr11 (67334717-67334913)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               122-268, gnl|bosTau2|chr19 (22380828-22380682)
               

               
               122-268, gnl|Hg17|chr17 (10164538-10164392)
               

               
               122-268, gnl|Mm7|chr11 (67436213-67436359)
               


               
               356-552, gnl|bosTau2|chr19 (22526091-22525895)
               

               
               356-552, gnl|Hg17|chr17 (10296375-10296179)
               

               
               356-552, gnl|Mm7|chr11 (67334717-67334913)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               sme (0.305437)
               

               
               nep (0.183925)
               

               
               ssp (0.13552)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               nep (0.183925)
               

               
               ssp (0.13552)

	122-268, gnl\|bosTau2\|chr19 (22380828-22380682)
	122-268, gnl\|Hg17\|chr17 (10164538-10164392)
	122-268, gnl\|Mm7\|chr11 (67436213-67436359)

	356-552, gnl\|bosTau2\|chr19 (22526091-22525895)
	356-552, gnl\|Hg17\|chr17 (10296375-10296179)
	356-552, gnl\|Mm7\|chr11 (67334717-67334913)