Ss1.1-rssp27_k15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTGCTCGGCAGTTTCCACGCGTTCGGATTGCGAATTGGTTGTCGTTTCTGCGGCAGTCT CATCTCCCGGTCTCTCGCCGCCACTGAATTGCCAAGATGTCGCTTTCTAACAAGCTGACT CTGGACAAGCTGGACGTGAAGGGAAAGAGGGTCGTCATGAGAGTGGACTTCAATGTTCCT ATGAAGAACAACCAGATAACGAACAACCAGAGGATCAAGGCTGCCATCCCAAGCATCAAA TTCTGCCTAGACAACGGAGCCAAGTCAGTTGTTCTTATGAGCCACCTAGGCCGGCCTGAT GGTATCCCTATGCCTGACAAGTACTCCTTGGAGCCAGTTGCTGTAGAACTCAAATCTCTG CTGGGCAAGGATGTTTTGTTCTTGAAGGACTGCGTGGGCCCAGAAGTGGAGAAAGCTTGT GCTGACCCAGCTGCTGGTTCTGTCATCCTGTTGGAGAACCTTCGCTTTCATGTGGAGGAA GAAGGGAAGGGAAAAGATGCTTCTGGGAGCAAGGTTAAAGCTGATCCAGCCAAAATAGAA GCCTTCCGAGCTTCACTTTCCAAGCTAGGGGATGTCTATGTCAATGATGCTTTTGGTACT GCTCACCGAGCTCACAGCTCCATGGTGGGAGTAAATCTGCCAAAGAAGGCTGGAGGTTTT TTGATGAAGAAGGAGCTGAACTACTTTGCCAAGGCCTTGGAGAGCCCAGAGCGACCCTTC CTGGCCATCCTGGGCGGAGCTAAAGTTGCAGACAAGATCCAGCTAATCAATAATATGCTG GACAAAGTCAATGAGATGATTATTGGTGGTGGAATGGCCTTTACCTTCCTTAAGGTGCTC AACAACATGGAGATTGGCACTTCTCTTTTTGATGAAGAGGGATCCAAGATCGTCAAAGAT CTGATGTCCAAAGCTGAGAAGAATGGTGTGAAGATTACTTTGCCTGTTGACTTTGTCACT GCTGACAAGTTTGATGAGAATGCCAAGATTGGCCAAGCCACTGTGGCCTCTGGTATACCT GCTGGGTGGATGGGCTTGGACTGTGGTCCTGAGAGCAGCAAGAAGTATAGTGAGGCTGTT GCTCGGGCTAAGCAGATTGTATGGAATGGACCTGTGGGCGTATTTGAATGGGAAGCTTTT GCCCAAGGAACCAAAGCCCTCATGGATGAGGTGGTGAAAGCCACTTCCAGGGGCTGCATC ACCATCATAGGTGGTGGAGACACTGCTACCTGCTGTGCCAAATGGAACACGGAGGATAAA GTCAGCCATGTGAGCACTGGGGGTGGTGCCAGTTTAGAGCTCCTGGAAGGTAAAGTCCTT CCTGGGGTGGATGCTCTCAGTAATGTTTAGTACTTTCCTGCCTTTTGGTTCCTGTGCACA GCCTCTAAGTCAACTTAGCGCTTTCTGCATCTCCACTTGGCATTAGCTATTATCTTCCCC CATGTCAAGATTCAGCAAGTAGCCAAGAGATGTAGCACCAGGAACCCTTAAACCATTGCA CAGCATCTCAGCTCATCTTTACTGCACCCTGGATTTGCCTATATTCCTCAAGATCCCATT TGAATTTACTAGTGTCTAAACCATTGTGCATTTAGAGTGCATATATTTATGCCTGTGTTA GCCTAGTTCTTTCTGAAGTAGCTTATTTTGATTAGCTTTTTCATTGTTTCACCACTCAAC ATGGAAACAAGATGAAATTCCAATTGTAGGGAGAGAGGGAGATGAAGTTGGTGATCTATT AAATAAATAATAAATATCTATTGAAACTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTGCTCGGCAGTTTCCACGCGTTCGGATTGCGAATTGGTTGTCGTTTCTGCGGCAGTCT CATCTCCCGGTCTCTCGCCGCCACTGAATTGCCAAGATGTCGCTTTCTAACAAGCTGACT CTGGACAAGCTGGACGTGAAGGGAAAGAGGGTCGTCATGAGAGTGGACTTCAATGTTCCT ATGAAGAACAACCAGATAACGAACAACCAGAGGATCAAGGCTGCCATCCCAAGCATCAAA TTCTGCCTAGACAACGGAGCCAAGTCAGTTGTTCTTATGAGCCACCTAGGCCGGCCTGAT GGTATCCCTATGCCTGACAAGTACTCCTTGGAGCCAGTTGCTGTAGAACTCAAATCTCTG CTGGGCAAGGATGTTTTGTTCTTGAAGGACTGCGTGGGCCCAGAAGTGGAGAAAGCTTGT GCTGACCCAGCTGCTGGTTCTGTCATCCTGTTGGAGAACCTTCGCTTTCATGTGGAGGAA GAAGGGAAGGGAAAAGATGCTTCTGGGAGCAAGGTTAAAGCTGATCCAGCCAAAATAGAA GCCTTCCGAGCTTCACTTTCCAAGCTAGGGGATGTCTATGTCAATGATGCTTTTGGTACT GCTCACCGAGCTCACAGCTCCATGGTGGGAGTAAATCTGCCAAAGAAGGCTGGAGGTTTT TTGATGAAGAAGGAGCTGAACTACTTTGCCAAGGCCTTGGAGAGCCCAGAGCGACCCTTC CTGGCCATCCTGGGCGGAGCTAAAGTTGCAGACAAGATCCAGCTAATCAATAATATGCTG GACAAAGTCAATGAGATGATTATTGGTGGTGGAATGGCCTTTACCTTCCTTAAGGTGCTC AACAACATGGAGATTGGCACTTCTCTTTTTGATGAAGAGGGATCCAAGATCGTCAAAGAT CTGATGTCCAAAGCTGAGAAGAATGGTGTGAAGATTACTTTGCCTGTTGACTTTGTCACT GCTGACAAGTTTGATGAGAATGCCAAGATTGGCCAAGCCACTGTGGCCTCTGGTATACCT GCTGGGTGGATGGGCTTGGACTGTGGTCCTGAGAGCAGCAAGAAGTATAGTGAGGCTGTT GCTCGGGCTAAGCAGATTGTATGGAATGGACCTGTGGGCGTATTTGAATGGGAAGCTTTT GCCCAAGGAACCAAAGCCCTCATGGATGAGGTGGTGAAAGCCACTTCCAGGGGCTGCATC ACCATCATAGGTGGTGGAGACACTGCTACCTGCTGTGCCAAATGGAACACGGAGGATAAA GTCAGCCATGTGAGCACTGGGGGTGGTGCCAGTTTAGAGCTCCTGGAAGGTAAAGTCCTT CCTGGGGTGGATGCTCTCAGTAATGTTTAGTACTTTCCTGCCTTTTGGTTCCTGTGCACA GCCTCTAAGTCAACTTAGCGCTTTCTGCATCTCCACTTGGCATTAGCTATTATCTTCCCC CATGTCAAGATTCAGCAAGTAGCCAAGAGATGTAGCACCAGGAACCCTTAAACCATTGCA CAGCATCTCAGCTCATCTTTACTGCACCCTGGATTTGCCTATATTCCTCAAGATCCCATT TGAATTTACTAGTGTCTAAACCATTGTGCATTTAGAGTGCATATATTTATGCCTGTGTTA GCCTAGTTCTTTCTGAAGTAGCTTATTTTGATTAGCTTTTTCATTGTTTCACCACTCAAC ATGGAAACAAGATGAAATTCCAATTGTAGGGAGAGAGGGAGATGAAGTTGGTGATCTATT AAATAAATAATAAATATCTATTGAAACTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 684-803, - strand, RNAz p=0.720949 | |
| 918-1018, - strand, RNAz p=0.93485 | |
| 1164-1356, - strand, RNAz p=0.938749 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 684-803, - strand, RNAz p=0.720949 | |
| 918-1018, - strand, RNAz p=0.93485 | |
| 1164-1356, - strand, RNAz p=0.938749 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 85-1748, gnl|bosTau2|chr23 (19646360-19648028) | |
| 85-1748, gnl|Hg17|chr6 (49862871-49861225) | |
| 85-1748, gnl|Mm7|chr17 (38249009-38247382) | |
| 395-664, gnl|bosTau2|chr12 (35516423-35516158) | |
| 395-664, gnl|canFam2|chr31 (21003732-21004056) | |
| 395-664, gnl|dasNov1|scaffold_129587 (3215-2893) | |
| 395-664, gnl|echTel1|scaffold_163420 (6772-6446) | |
| 395-664, gnl|hg17|chr21 (22429956-22430278) | |
| 395-664, gnl|Hg17|chr21 (22430229-22429960) | |
| 395-664, gnl|loxAfr1|scaffold_20799 (41246-40927) | |
| 395-664, gnl|mm7|chr12 (10944204-10944528) | |
| 395-664, gnl|Mm7|chr12 (10944479-10944257) | |
| 395-664, gnl|monDom2|scaffold_9 (46275046-46274722) | |
| 395-664, gnl|oryCun1|scaffold_177699 (38455-38136) | |
| 395-664, gnl|panTro1|chr22 (22593728-22594050) | |
| 395-664, gnl|rheMac2|chr7 (40308470-40308146) | |
| 395-664, gnl|rn3|chr1 (92839863-92839555) | |
| 918-1186, gnl|bosTau2|chr12 (35515682-35515412) | |
| 918-1186, gnl|canFam2|chr31 (21003144-21003473) | |
| 918-1186, gnl|dasNov1|scaffold_129587 (3807-3461) | |
| 918-1186, gnl|echTel1|scaffold_163420 (7372-7044) | |
| 918-1186, gnl|hg17|chr21 (22428960-22429264) | |
| 918-1186, gnl|Hg17|chr21 (22429272-22429020) | |
| 918-1186, gnl|loxAfr1|scaffold_20799 (42053-41754) | |
| 918-1186, gnl|mm7|chr12 (10943603-10943934) | |
| 918-1186, gnl|Mm7|chr12 (10943958-10943688) | |
| 918-1186, gnl|monDom2|scaffold_9 (46275647-46275317) | |
| 918-1186, gnl|oryCun1|scaffold_177699 (39026-38702) | |
| 918-1186, gnl|panTro1|chr22 (22592740-22593044) | |
| 918-1186, gnl|rheMac2|chr7 (40309071-40308741) | |
| 918-1186, gnl|rn3|chr1 (92840463-92840115) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 85-1748, gnl|bosTau2|chr23 (19646360-19648028) | |
| 85-1748, gnl|Hg17|chr6 (49862871-49861225) | |
| 85-1748, gnl|Mm7|chr17 (38249009-38247382) | |
| 395-664, gnl|bosTau2|chr12 (35516423-35516158) | |
| 395-664, gnl|canFam2|chr31 (21003732-21004056) | |
| 395-664, gnl|dasNov1|scaffold_129587 (3215-2893) | |
| 395-664, gnl|echTel1|scaffold_163420 (6772-6446) | |
| 395-664, gnl|hg17|chr21 (22429956-22430278) | |
| 395-664, gnl|Hg17|chr21 (22430229-22429960) | |
| 395-664, gnl|loxAfr1|scaffold_20799 (41246-40927) | |
| 395-664, gnl|mm7|chr12 (10944204-10944528) | |
| 395-664, gnl|Mm7|chr12 (10944479-10944257) | |
| 395-664, gnl|monDom2|scaffold_9 (46275046-46274722) | |
| 395-664, gnl|oryCun1|scaffold_177699 (38455-38136) | |
| 395-664, gnl|panTro1|chr22 (22593728-22594050) | |
| 395-664, gnl|rheMac2|chr7 (40308470-40308146) | |
| 395-664, gnl|rn3|chr1 (92839863-92839555) | |
| 918-1186, gnl|bosTau2|chr12 (35515682-35515412) | |
| 918-1186, gnl|canFam2|chr31 (21003144-21003473) | |
| 918-1186, gnl|dasNov1|scaffold_129587 (3807-3461) | |
| 918-1186, gnl|echTel1|scaffold_163420 (7372-7044) | |
| 918-1186, gnl|hg17|chr21 (22428960-22429264) | |
| 918-1186, gnl|Hg17|chr21 (22429272-22429020) | |
| 918-1186, gnl|loxAfr1|scaffold_20799 (42053-41754) | |
| 918-1186, gnl|mm7|chr12 (10943603-10943934) | |
| 918-1186, gnl|Mm7|chr12 (10943958-10943688) | |
| 918-1186, gnl|monDom2|scaffold_9 (46275647-46275317) | |
| 918-1186, gnl|oryCun1|scaffold_177699 (39026-38702) | |
| 918-1186, gnl|panTro1|chr22 (22592740-22593044) | |
| 918-1186, gnl|rheMac2|chr7 (40309071-40308741) | |
| 918-1186, gnl|rn3|chr1 (92840463-92840115) |
| Expressed library(ies): 65 entry(ies) | More info |
| Expressed library(ies): 65 entry(ies) | Help | Less info |
| bfe (4.04616) | |
| ste (3.51541) | |
| ldo (3.49209) | |
| sme (3.3598) | |
| tbr (1.85014) | |
| isp (1.20301) | |
| hlv (0.974795) | |
| ssp (0.948638) | |
| eye (0.852515) | |
| col (0.780031) | |
| spl (0.715922) | |
| nms (0.641574) | |
| hea (0.613497) | |
| cbl (0.573987) | |
| nep (0.551775) | |
| fbs (0.526039) | |
| fhi (0.508733) | |
| clu (0.478583) | |
| hyp (0.42851) | |
| mas (0.42061) | |
| amn (0.417711) | |
| cty (0.41632) | |
| pla (0.401016) | |
| fcc (0.39557) | |
| bla (0.373042) | |
| sag (0.36543) | |
| fty (0.351679) | |
| ecc (0.345105) | |
| cki (0.330469) | |
| nco (0.323468) | |
| liv (0.292569) | |
| fce (0.271592) | |
| cov (0.264306) | |
| sug (0.254582) | |
| eru (0.240096) | |
| ece (0.229305) | |
| jca (0.22792) | |
| aor (0.195274) | |
| gul (0.177588) | |
| ill (0.175593) | |
| sin (0.174948) | |
| rec (0.17307) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| mga (0.160205) | |
| fco (0.157208) | |
| cli (0.152812) | |
| cag (0.151194) | |
| lun (0.150489) | |
| fat (0.147427) | |
| lin (0.145603) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| kid (0.129735) | |
| cbr (0.127975) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| med (0.116252) | |
| spc (0.113366) | |
| nbm (0.0993246) |
| Expressed library(ies): 65 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bfe (4.04616) | |
| ste (3.51541) | |
| ldo (3.49209) | |
| sme (3.3598) | |
| tbr (1.85014) | |
| isp (1.20301) | |
| hlv (0.974795) | |
| ssp (0.948638) | |
| eye (0.852515) | |
| col (0.780031) | |
| spl (0.715922) | |
| nms (0.641574) | |
| hea (0.613497) | |
| cbl (0.573987) | |
| nep (0.551775) | |
| fbs (0.526039) | |
| fhi (0.508733) | |
| clu (0.478583) | |
| hyp (0.42851) | |
| mas (0.42061) | |
| amn (0.417711) | |
| cty (0.41632) | |
| pla (0.401016) | |
| fcc (0.39557) | |
| bla (0.373042) | |
| sag (0.36543) | |
| fty (0.351679) | |
| ecc (0.345105) | |
| cki (0.330469) | |
| nco (0.323468) | |
| liv (0.292569) | |
| fce (0.271592) | |
| cov (0.264306) | |
| sug (0.254582) | |
| eru (0.240096) | |
| ece (0.229305) | |
| jca (0.22792) | |
| aor (0.195274) | |
| gul (0.177588) | |
| ill (0.175593) | |
| sin (0.174948) | |
| rec (0.17307) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| mga (0.160205) | |
| fco (0.157208) | |
| cli (0.152812) | |
| cag (0.151194) | |
| lun (0.150489) | |
| fat (0.147427) | |
| lin (0.145603) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| kid (0.129735) | |
| cbr (0.127975) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| med (0.116252) | |
| spc (0.113366) | |
| nbm (0.0993246) |