Non-Coding RNA Search

Ss1.1-rssp27_o10.5

Sequence:


               
               GGACGATGAAGCCATCATTGCTGCCTGGAGACGCCGGCAAGAAGAAACCAGGACTAAGCT
GCAGAGAAGGAGGGAAGATTAAGCTGGGCCACATGTATCTGGGAGAGACTGAGAACACAG
GGAGAAGCCATACAGCTTAGCACAGGGCTCAAGGCACACATTGCCACAGCCCATCAGGGG
ACAAGGATGTGGAGATTATGACACAGATGGGTGGAGGTGAAATGAGAGGTTGCAGGAAGA
AGGACATTGGAGGTGGGGCAGATAGGAGGAGACGAGCCATAAATGTGAGGTCCGAATGAG
GGACCAACTGACACCATTTCTGTCACACAGTGTCCTCTAAGCTTTGGTGCTTCACGTATG
CATTTGATCATGTTCATCATAGACTAGAGAGATGAGCTTGCAAAGGCACTATGTTTTGTC
AGTGACTCCAGCTTATATCCAGGAAGGCTGTGAATGCAGGATGTAGTTCTATATGTAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACGATGAAGCCATCATTGCTGCCTGGAGACGCCGGCAAGAAGAAACCAGGACTAAGCT
GCAGAGAAGGAGGGAAGATTAAGCTGGGCCACATGTATCTGGGAGAGACTGAGAACACAG
GGAGAAGCCATACAGCTTAGCACAGGGCTCAAGGCACACATTGCCACAGCCCATCAGGGG
ACAAGGATGTGGAGATTATGACACAGATGGGTGGAGGTGAAATGAGAGGTTGCAGGAAGA
AGGACATTGGAGGTGGGGCAGATAGGAGGAGACGAGCCATAAATGTGAGGTCCGAATGAG
GGACCAACTGACACCATTTCTGTCACACAGTGTCCTCTAAGCTTTGGTGCTTCACGTATG
CATTTGATCATGTTCATCATAGACTAGAGAGATGAGCTTGCAAAGGCACTATGTTTTGTC
AGTGACTCCAGCTTATATCCAGGAAGGCTGTGAATGCAGGATGTAGTTCTATATGTAGAG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-480, gnl|bosTau2|chr3 (2691693-2691209)
               

               
               1-480, gnl|Hg17|chr1 (163829422-163829902)
               

               
               1-480, gnl|Mm7|chr1 (166069418-166068968)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-480, gnl|bosTau2|chr3 (2691693-2691209)
               

               
               1-480, gnl|Hg17|chr1 (163829422-163829902)
               

               
               1-480, gnl|Mm7|chr1 (166069418-166068968)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               vin (0.332557)
               

               
               ssp (0.13552)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               ssp (0.13552)

	1-480, gnl\|bosTau2\|chr3 (2691693-2691209)
	1-480, gnl\|Hg17\|chr1 (163829422-163829902)
	1-480, gnl\|Mm7\|chr1 (166069418-166068968)