Non-Coding RNA Search

Ss1.1-rssp28_a10.5

Sequence:


               
               GCTGTGTTCACAAAAAACCTTGACAAAGCCCTGAAGCTGGCCTCCGCATTAGAGTCTGGA
ACCGTCTGGATCAACTGCTACAATGCCATCTATGCACAGGCCCCATTTGGTGGCTTCAAA
ATGTCGGGGAACGGCAGAGAACTAGGCGAATATGCGCTAGCCGAATACACAGAAGTGAAA
ACTGTCACCATCAAACTTGACGACAAGAACCCTTGAAGGAAAGGCAGGCTCCTTCCTCAG
ACTTCTGACAGCTGAATGTGGCAGATCAAACTTGCCGAAGAAAATCCTGCATTTCTGACC
TTCCTGGGATGCTTTCTTCTGGAGACTTTACATCTGCTGGATTTGAACAATTTATTTTCC
TCTCACACTCCTGTTTTGTCGACTGATATGTTGTGTGTCAAATTGCAGTCCTGCCCGGGG
GATGGGCCGAGTGGCCATTTCTGTTTTCCCCTTTCCACCAGATCCCAGGGGACAGTGAGG
AGGCTCAGGGCGTAGCCAACAGGAAATGGCATTTGAAGTATCCAGCAGTCACTCAAAAAT
GCTTTGCTGACTCTGACTCCAGTAAGAATTTGGAAAATAAAAATTTCCCTTCATGTTCTG
CAAACAGGCCCTGTAACCTCAGGGTTACCTGCCTGCAGGACAAGCCCCTCCTGCTATTCA
GTGGGAAAGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGTGTTCACAAAAAACCTTGACAAAGCCCTGAAGCTGGCCTCCGCATTAGAGTCTGGA
ACCGTCTGGATCAACTGCTACAATGCCATCTATGCACAGGCCCCATTTGGTGGCTTCAAA
ATGTCGGGGAACGGCAGAGAACTAGGCGAATATGCGCTAGCCGAATACACAGAAGTGAAA
ACTGTCACCATCAAACTTGACGACAAGAACCCTTGAAGGAAAGGCAGGCTCCTTCCTCAG
ACTTCTGACAGCTGAATGTGGCAGATCAAACTTGCCGAAGAAAATCCTGCATTTCTGACC
TTCCTGGGATGCTTTCTTCTGGAGACTTTACATCTGCTGGATTTGAACAATTTATTTTCC
TCTCACACTCCTGTTTTGTCGACTGATATGTTGTGTGTCAAATTGCAGTCCTGCCCGGGG
GATGGGCCGAGTGGCCATTTCTGTTTTCCCCTTTCCACCAGATCCCAGGGGACAGTGAGG
AGGCTCAGGGCGTAGCCAACAGGAAATGGCATTTGAAGTATCCAGCAGTCACTCAAAAAT
GCTTTGCTGACTCTGACTCCAGTAAGAATTTGGAAAATAAAAATTTCCCTTCATGTTCTG
CAAACAGGCCCTGTAACCTCAGGGTTACCTGCCTGCAGGACAAGCCCCTCCTGCTATTCA
GTGGGAAAGATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7512677|pir||T14799

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7512677|pir||T14799

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               183-294, - strand, RNAz p=0.772787
               

               
               553-660, - strand, RNAz p=0.989745

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               183-294, - strand, RNAz p=0.772787
               

               
               553-660, - strand, RNAz p=0.989745

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               144-670, gnl|bosTau2|chr28 (9207509-9206981)
               

               
               144-670, gnl|Hg17|chr15 (99272429-99272996)
               

               
               144-670, gnl|Mm7|chr7 (62250728-62250186)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               144-670, gnl|bosTau2|chr28 (9207509-9206981)
               

               
               144-670, gnl|Hg17|chr15 (99272429-99272996)
               

               
               144-670, gnl|Mm7|chr7 (62250728-62250186)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ssp (0.271039)
               

               
               lnt (0.142308)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.271039)
               

               
               lnt (0.142308)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	183-294, - strand, RNAz p=0.772787
	553-660, - strand, RNAz p=0.989745

	144-670, gnl\|bosTau2\|chr28 (9207509-9206981)
	144-670, gnl\|Hg17\|chr15 (99272429-99272996)
	144-670, gnl\|Mm7\|chr7 (62250728-62250186)