Non-Coding RNA Search

Ss1.1-rssp28_d15.5

Sequence:


               
               TCTGGACAACTCGCCTGCTTCTTATATCTTCCACCCAGAGAATGCAGTGCCTGTGCAGTC
TTGGTTTGATGACATGGCGGACACTGAGCTGCTGAACCTGATCCCAATCTTTGAGGAGCT
GAGCGGAGCAGAGGATGTCTACACCAGCCTTGGGCAGCTGCGGGCCCCTTAGCTTTTTCC
CTGCTGCCAAGCAACGGCCATCCCAGTAGGGGACTTTCCTACACTGTGCCTTTATGATCA
GCCTGACAGAGTAGAAGCTGGAGCATCTCACCAGATGAGGCCTGGAAATAGAAGTGATTG
GAAAGAGCTTTAGGACAGGTTAGATGCCAAGTGGGCAAGTACCAGACCAGCGATACCCAG
AGCTGCCTGCTCCCTGAGACGGGTTCCCGAGGTTTGTGTGTGCGTGTGTCTATGTGTGTG
TGTCTTGCCTTGACCTGTGGTCCTGGGATATAAGTGTTTCAGGTTCGGGGAGAAGCTGAA
TGATCAAAACTCTTCCCAAGTTGGTCTCCTCTCCTGTCACGCTGAACGCCATCGCTCTCT
GTAGGGATGAAGACTTGGAGGTCCTATTGCCAACCCCTTGGCCTCTCCTCAGTGTTGTAA
GGCTTATGCCAAGGAGAAAGGAAGGGTCAGAGGCTGCCTTCAGGTGCCCCTGGCACACAC
CTTTCTGAAACCTTTCTCCAGCCAGCTGCTGCAGACAGAAGACATCTCTGGGAAGATGAA
AGAAAGCTTGTTTCCAGAACTGGTAGCCCAAGCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGGACAACTCGCCTGCTTCTTATATCTTCCACCCAGAGAATGCAGTGCCTGTGCAGTC
TTGGTTTGATGACATGGCGGACACTGAGCTGCTGAACCTGATCCCAATCTTTGAGGAGCT
GAGCGGAGCAGAGGATGTCTACACCAGCCTTGGGCAGCTGCGGGCCCCTTAGCTTTTTCC
CTGCTGCCAAGCAACGGCCATCCCAGTAGGGGACTTTCCTACACTGTGCCTTTATGATCA
GCCTGACAGAGTAGAAGCTGGAGCATCTCACCAGATGAGGCCTGGAAATAGAAGTGATTG
GAAAGAGCTTTAGGACAGGTTAGATGCCAAGTGGGCAAGTACCAGACCAGCGATACCCAG
AGCTGCCTGCTCCCTGAGACGGGTTCCCGAGGTTTGTGTGTGCGTGTGTCTATGTGTGTG
TGTCTTGCCTTGACCTGTGGTCCTGGGATATAAGTGTTTCAGGTTCGGGGAGAAGCTGAA
TGATCAAAACTCTTCCCAAGTTGGTCTCCTCTCCTGTCACGCTGAACGCCATCGCTCTCT
GTAGGGATGAAGACTTGGAGGTCCTATTGCCAACCCCTTGGCCTCTCCTCAGTGTTGTAA
GGCTTATGCCAAGGAGAAAGGAAGGGTCAGAGGCTGCCTTCAGGTGCCCCTGGCACACAC
CTTTCTGAAACCTTTCTCCAGCCAGCTGCTGCAGACAGAAGACATCTCTGGGAAGATGAA
AGAAAGCTTGTTTCCAGAACTGGTAGCCCAAGCACT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               47-423, gnl|bosTau2|chr5 (34388206-34387832)
               

               
               47-423, gnl|Hg17|chr12 (56503777-56503421)
               

               
               47-423, gnl|Mm7|chr10 (126493839-126494156)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-423, gnl|bosTau2|chr5 (34388206-34387832)
               

               
               47-423, gnl|Hg17|chr12 (56503777-56503421)
               

               
               47-423, gnl|Mm7|chr10 (126493839-126494156)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               jej (0.197844)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               ldo (0.0970026)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               ldo (0.0970026)

	47-423, gnl\|bosTau2\|chr5 (34388206-34387832)
	47-423, gnl\|Hg17\|chr12 (56503777-56503421)
	47-423, gnl\|Mm7\|chr10 (126493839-126494156)

	jej (0.197844)
	duo (0.172801)
	nco (0.161734)
	fat (0.147427)
	ssp (0.13552)
	ste (0.135208)
	ute (0.132784)
	eep (0.122564)
	ldo (0.0970026)