Ss1.1-rssp28_e14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCAACCCTGCAGCGAGCCTGTGCAAGCTTGGCCCACCAGGCGGAGAGCAGTGTGGAATC ACAGACACTGAGCATGTCCATGGGGCTTGTGGCCGTCATGCTGGGAGGAGCTGTTCAGTT GAAGTCAAGTGACTTTGCCGTCCTGAAGCAGTTGGTGCCACTGTTGGAGAAGGTCTCCAC CACCTACCCTGACCCCGTCATCCAAGAACTGGCCGTTGACCTCCGCATCACCATCTCCAC CCACGGAGCCTTTACCACTGAGGCTGTCAGTGTGGCTGCCCAGAGTACCCTGAGCAAAGA GGATCCAGAAGGGAAAAGGGAAGAGCAGCAACAAGCCAGTCATGAAAGACACTGCGACAT GTCTCCTAGCCACCTCAAACCACAGCAAAGCCACGACATGTCCAGACAAACAGGCCTGAA ACCTAATCCTCCACTTGTTCCTCCGGTCGTCCGTGAGCCCAGCATCACTACAAACCAGAA ATCAGGAAGCCTAACCGCAGAGCAGCTCCAGGAAGCTCTTTTATCAGCTTACGACCCTCA GATTCCAACAAGGGCTGCTGCCCTGCGAACTCTTTCTCGCTGGGTAGAGCAGAGAGAACC AAAAGCCCTTGAGGTGCAGGAGAAACTTCTCAAGGTTTTCTTGGAGAACTTGGAACATGA AGACACCTTTGTATACCTGTCTGCTATTCAGGGGGCTGCCCTGCTCTCAGATGTGTACCC TGAGAAAATCTTGTGTGGCTTATTGACTCAATATGATGCTGGTAAAGACAAGCACACGGC AGAGACCAGAATGAAAGTTGGGGGAAGTCCTGATGCGAACTGTCAGGGCATTAGGGGACA TGGTCTCAAAGTACCGAGAACCTCTGATCCACACCTTCCTGAGGGGAGCAAGAGATCCAG ACGGTGCTCACAGGGCCAGCAGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCAACCCTGCAGCGAGCCTGTGCAAGCTTGGCCCACCAGGCGGAGAGCAGTGTGGAATC ACAGACACTGAGCATGTCCATGGGGCTTGTGGCCGTCATGCTGGGAGGAGCTGTTCAGTT GAAGTCAAGTGACTTTGCCGTCCTGAAGCAGTTGGTGCCACTGTTGGAGAAGGTCTCCAC CACCTACCCTGACCCCGTCATCCAAGAACTGGCCGTTGACCTCCGCATCACCATCTCCAC CCACGGAGCCTTTACCACTGAGGCTGTCAGTGTGGCTGCCCAGAGTACCCTGAGCAAAGA GGATCCAGAAGGGAAAAGGGAAGAGCAGCAACAAGCCAGTCATGAAAGACACTGCGACAT GTCTCCTAGCCACCTCAAACCACAGCAAAGCCACGACATGTCCAGACAAACAGGCCTGAA ACCTAATCCTCCACTTGTTCCTCCGGTCGTCCGTGAGCCCAGCATCACTACAAACCAGAA ATCAGGAAGCCTAACCGCAGAGCAGCTCCAGGAAGCTCTTTTATCAGCTTACGACCCTCA GATTCCAACAAGGGCTGCTGCCCTGCGAACTCTTTCTCGCTGGGTAGAGCAGAGAGAACC AAAAGCCCTTGAGGTGCAGGAGAAACTTCTCAAGGTTTTCTTGGAGAACTTGGAACATGA AGACACCTTTGTATACCTGTCTGCTATTCAGGGGGCTGCCCTGCTCTCAGATGTGTACCC TGAGAAAATCTTGTGTGGCTTATTGACTCAATATGATGCTGGTAAAGACAAGCACACGGC AGAGACCAGAATGAAAGTTGGGGGAAGTCCTGATGCGAACTGTCAGGGCATTAGGGGACA TGGTCTCAAAGTACCGAGAACCTCTGATCCACACCTTCCTGAGGGGAGCAAGAGATCCAG ACGGTGCTCACAGGGCCAGCAGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 519-636, - strand, RNAz p=0.955857 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 519-636, - strand, RNAz p=0.955857 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 117-393, gnl|bosTau2|chr18 (14150363-14150087) | |
| 117-393, gnl|Hg17|chr16 (67518970-67519246) | |
| 117-393, gnl|Mm7|chr8 (105340876-105341146) | |
| 435-636, gnl|bosTau2|chr18 (14150084-14149883) | |
| 435-636, gnl|canFam2|chr5 (83676316-83675860) | |
| 435-636, gnl|danRer3|chr18 (14983774-14984212) | |
| 435-636, gnl|dasNov1|scaffold_133475 (4-469) | |
| 435-636, gnl|echTel1|scaffold_100185 (6026-5567) | |
| 435-636, gnl|fr1|chrUn (338582325-338581878) | |
| 435-636, gnl|galGal2|chr11_random (90754-91212) | |
| 435-636, gnl|hg17|chr16 (67519039-67519504) | |
| 435-636, gnl|Hg17|chr16 (67519288-67519489) | |
| 435-636, gnl|mm7|chr8 (105340945-105341353) | |
| 435-636, gnl|Mm7|chr8 (105341149-105341338) | |
| 435-636, gnl|monDom2|scaffold_23 (5299863-5299362) | |
| 435-636, gnl|panTro1|chr18 (61842474-61842939) | |
| 435-636, gnl|rheMac2|chr20 (67292695-67293160) | |
| 435-636, gnl|rn3|chr19 (36576017-36576446) | |
| 692-838, gnl|bosTau2|chr18 (14117879-14117734) | |
| 692-838, gnl|canFam2|chr5 (83646120-83645897) | |
| 692-838, gnl|dasNov1|scaffold_142130 (3009-3245) | |
| 692-838, gnl|echTel1|scaffold_325026 (5232-5540) | |
| 692-838, gnl|hg17|chr16 (67565372-67565609) | |
| 692-838, gnl|Hg17|chr16 (67565431-67565576) | |
| 692-838, gnl|loxAfr1|scaffold_7116 (33799-33562) | |
| 692-838, gnl|mm7|chr8 (105381783-105382021) | |
| 692-838, gnl|Mm7|chr8 (105381838-105381983) | |
| 692-838, gnl|monDom2|scaffold_23 (5273640-5273400) | |
| 692-838, gnl|oryCun1|scaffold_214809 (73726-73956) | |
| 692-838, gnl|panTro1|chr18 (61892079-61892319) | |
| 692-838, gnl|rn3|chr19 (36619402-36619645) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 117-393, gnl|bosTau2|chr18 (14150363-14150087) | |
| 117-393, gnl|Hg17|chr16 (67518970-67519246) | |
| 117-393, gnl|Mm7|chr8 (105340876-105341146) | |
| 435-636, gnl|bosTau2|chr18 (14150084-14149883) | |
| 435-636, gnl|canFam2|chr5 (83676316-83675860) | |
| 435-636, gnl|danRer3|chr18 (14983774-14984212) | |
| 435-636, gnl|dasNov1|scaffold_133475 (4-469) | |
| 435-636, gnl|echTel1|scaffold_100185 (6026-5567) | |
| 435-636, gnl|fr1|chrUn (338582325-338581878) | |
| 435-636, gnl|galGal2|chr11_random (90754-91212) | |
| 435-636, gnl|hg17|chr16 (67519039-67519504) | |
| 435-636, gnl|Hg17|chr16 (67519288-67519489) | |
| 435-636, gnl|mm7|chr8 (105340945-105341353) | |
| 435-636, gnl|Mm7|chr8 (105341149-105341338) | |
| 435-636, gnl|monDom2|scaffold_23 (5299863-5299362) | |
| 435-636, gnl|panTro1|chr18 (61842474-61842939) | |
| 435-636, gnl|rheMac2|chr20 (67292695-67293160) | |
| 435-636, gnl|rn3|chr19 (36576017-36576446) | |
| 692-838, gnl|bosTau2|chr18 (14117879-14117734) | |
| 692-838, gnl|canFam2|chr5 (83646120-83645897) | |
| 692-838, gnl|dasNov1|scaffold_142130 (3009-3245) | |
| 692-838, gnl|echTel1|scaffold_325026 (5232-5540) | |
| 692-838, gnl|hg17|chr16 (67565372-67565609) | |
| 692-838, gnl|Hg17|chr16 (67565431-67565576) | |
| 692-838, gnl|loxAfr1|scaffold_7116 (33799-33562) | |
| 692-838, gnl|mm7|chr8 (105381783-105382021) | |
| 692-838, gnl|Mm7|chr8 (105381838-105381983) | |
| 692-838, gnl|monDom2|scaffold_23 (5273640-5273400) | |
| 692-838, gnl|oryCun1|scaffold_214809 (73726-73956) | |
| 692-838, gnl|panTro1|chr18 (61892079-61892319) | |
| 692-838, gnl|rn3|chr19 (36619402-36619645) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ssp (0.13552) |