Non-Coding RNA Search

Ss1.1-rssp28_g4.5

Sequence:


               
               GAGCGGCTGCCCTGCCCATGGGTAGCACGCTCCTGGGCCACACCTCGAGATCAGGCCCTG
GGGACCTGCACCTGAATCAAGCACATTTCTTCTCCAGTTTTAGCATCTGAGAGAGCACAA
ACTGTATGGCCTCTTTGCAGCTAAAGGAAACCAAAGGAGGAACTGAAAAGAGGGAGACAG
GACATAAGAGCATGGCTAAGATTTAACCCAGACTTTTGGGTTCCTGTGTCTTATTCCCAG
GCCTCAGCCATGCATTATTATCTGGAATCTCAGAGCTTAGAGGCCAAACCAGTGGCCAGA
GCTTTCTGTGGGTACAGCGGCTCCGACAGGTCCAGAGATTATCAACCAACTATAATTAAC
TAACCCACTGAGGCCATTAAGTGGCGCTGTGAGATCTGATACAAGGCCTGTGTGTTCGGA
TCTTTGCTGAAACACCACTGGCAGAGGAGAGCCACACCCTGCAAACACATCCTCAGATGC
ACACACAAGTCTTGGTGCCTCCAGGTTCAATCCTGCATTTGATCTTTTGATGAGAAGGAA
ATAAACCAGACCAGCCATTTGCAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCGGCTGCCCTGCCCATGGGTAGCACGCTCCTGGGCCACACCTCGAGATCAGGCCCTG
GGGACCTGCACCTGAATCAAGCACATTTCTTCTCCAGTTTTAGCATCTGAGAGAGCACAA
ACTGTATGGCCTCTTTGCAGCTAAAGGAAACCAAAGGAGGAACTGAAAAGAGGGAGACAG
GACATAAGAGCATGGCTAAGATTTAACCCAGACTTTTGGGTTCCTGTGTCTTATTCCCAG
GCCTCAGCCATGCATTATTATCTGGAATCTCAGAGCTTAGAGGCCAAACCAGTGGCCAGA
GCTTTCTGTGGGTACAGCGGCTCCGACAGGTCCAGAGATTATCAACCAACTATAATTAAC
TAACCCACTGAGGCCATTAAGTGGCGCTGTGAGATCTGATACAAGGCCTGTGTGTTCGGA
TCTTTGCTGAAACACCACTGGCAGAGGAGAGCCACACCCTGCAAACACATCCTCAGATGC
ACACACAAGTCTTGGTGCCTCCAGGTTCAATCCTGCATTTGATCTTTTGATGAGAAGGAA
ATAAACCAGACCAGCCATTTGCAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               36-563, gnl|bosTau2|chr24 (32316123-32316638)
               

               
               36-563, gnl|Hg17|chr18 (42513738-42513203)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-563, gnl|bosTau2|chr24 (32316123-32316638)
               

               
               36-563, gnl|Hg17|chr18 (42513738-42513203)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               ssp (0.13552)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               ssp (0.13552)

	36-563, gnl\|bosTau2\|chr24 (32316123-32316638)
	36-563, gnl\|Hg17\|chr18 (42513738-42513203)