Non-Coding RNA Search

Ss1.1-rssp29_i11.5

Sequence:


               
               GTGGAACCGTATCTGTGCATCGAGCAGTTTCGCATCCCCCGCGACCGCCTGGTGGGCCGC
AGCCGGCCCGGGCTATATAGCCACCTCTTGGACCAGCTCTATGAGCTGAACGTGCTGCCT
CCGACTGCGCGCAGGAGCCGCCTGGGCGTTCTCTTCTGCCCGCGCCCGGATGGCACAGCT
GACATGCATATCATCATCAATGGCGAGGACATGGGCCCCAGCGCCCGGGGGCTGCCAGCC
GCCCAGCCCCTCTATGCGGTGGTGGACGTCTTTGCCTCCACCAAGAGCGTGCGCCTGGTC
CAGCTCGAGTATGGCTTGCCATCCCTGCAGACCCTGTGCCGCCTGGTGATCCAGAGGAGC
GTGGTGCACCGGTTGGCCATCGATGGGCTCCACCTGCCCAAAGGACTTAAGGATTTCTGC
AAGTATGAGTGAAGACCTGCAGCCACTCTGGAGCAGGGCCACAGGAGTGCATCCCGGCCC
TAGAGGCGTGGCTGCTCTGAAGTTGGCCATACTGCTGCCAGCTAGGATAGAAATAAACAG
AGGATGCTGACACTGACCCTGGGAGGGTTCCCTTGCCCCTGAAGCCTGCGAGGGGCACTT
CTTTTAGAATCACTGGGAGTCAGTAGGTCAGAACAAGAGAGTGCATTTTGACATCACCTA
GACAAGTGGTTCCTAGCCTGGATACTCATTATCTGGGATACCCAGCAAGCTGCTGCCCTG
ATCCCATCTCCAAGACATTCTCATTTGCTTTCCTGAAGGATTAGGGCTAGCCACTGTTTT
TGTAAAAGCTCCCCAGGGCTGAGAAGCATTTTTATAGAACAGAGGTCTCAACTTTGGCAC
ATATTATAAACCACTTGAAGAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGAACCGTATCTGTGCATCGAGCAGTTTCGCATCCCCCGCGACCGCCTGGTGGGCCGC
AGCCGGCCCGGGCTATATAGCCACCTCTTGGACCAGCTCTATGAGCTGAACGTGCTGCCT
CCGACTGCGCGCAGGAGCCGCCTGGGCGTTCTCTTCTGCCCGCGCCCGGATGGCACAGCT
GACATGCATATCATCATCAATGGCGAGGACATGGGCCCCAGCGCCCGGGGGCTGCCAGCC
GCCCAGCCCCTCTATGCGGTGGTGGACGTCTTTGCCTCCACCAAGAGCGTGCGCCTGGTC
CAGCTCGAGTATGGCTTGCCATCCCTGCAGACCCTGTGCCGCCTGGTGATCCAGAGGAGC
GTGGTGCACCGGTTGGCCATCGATGGGCTCCACCTGCCCAAAGGACTTAAGGATTTCTGC
AAGTATGAGTGAAGACCTGCAGCCACTCTGGAGCAGGGCCACAGGAGTGCATCCCGGCCC
TAGAGGCGTGGCTGCTCTGAAGTTGGCCATACTGCTGCCAGCTAGGATAGAAATAAACAG
AGGATGCTGACACTGACCCTGGGAGGGTTCCCTTGCCCCTGAAGCCTGCGAGGGGCACTT
CTTTTAGAATCACTGGGAGTCAGTAGGTCAGAACAAGAGAGTGCATTTTGACATCACCTA
GACAAGTGGTTCCTAGCCTGGATACTCATTATCTGGGATACCCAGCAAGCTGCTGCCCTG
ATCCCATCTCCAAGACATTCTCATTTGCTTTCCTGAAGGATTAGGGCTAGCCACTGTTTT
TGTAAAAGCTCCCCAGGGCTGAGAAGCATTTTTATAGAACAGAGGTCTCAACTTTGGCAC
ATATTATAAACCACTTGAAGAACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13929456|emb|CAC36018.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13929456|emb|CAC36018.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-316, gnl|bosTau2|chr13 (54487852-54487537)
               

               
               1-316, gnl|Hg17|chr20 (43952611-43952296)
               

               
               1-316, gnl|Mm7|chr2 (164573668-164573353)
               


               
               317-760, gnl|bosTau2|chr13 (54486353-54485918)
               

               
               317-760, gnl|Hg17|chr20 (43950919-43950478)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-316, gnl|bosTau2|chr13 (54487852-54487537)
               

               
               1-316, gnl|Hg17|chr20 (43952611-43952296)
               

               
               1-316, gnl|Mm7|chr2 (164573668-164573353)
               


               
               317-760, gnl|bosTau2|chr13 (54486353-54485918)
               

               
               317-760, gnl|Hg17|chr20 (43950919-43950478)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hlv (0.139256)
               

               
               ssp (0.13552)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)
               

               
               ssp (0.13552)

	1-316, gnl\|bosTau2\|chr13 (54487852-54487537)
	1-316, gnl\|Hg17\|chr20 (43952611-43952296)
	1-316, gnl\|Mm7\|chr2 (164573668-164573353)

	317-760, gnl\|bosTau2\|chr13 (54486353-54485918)
	317-760, gnl\|Hg17\|chr20 (43950919-43950478)