Non-Coding RNA Search

Ss1.1-rssp29_m9.5

Sequence:


               
               GTTTTTTTTTTTTTTTTTTCTTTG------------------------------------
------------------------------------------------ACAGCCACACCA
GACCCAAGCCACATCTGCAACCTATACCACAGCTCATGGCAACACCAGATTCTTAACCCA
GTGAGTGAGGCCAGGGATGGAACCCACATCCTCATGGATACTAGTTGGGTTCTTAATCCA
CTGAGCCACAGTGGGAACTCCACATTCTTATTACCTATTATATTTATTAGAATAATTGTA
TAATTATATAACTATATGATTGCATAATTGTATAATAATATTATAATTAGTCCTCCATTC
TGCTTTGAATACATAATTATAAAATATGCTTACCCTGTTTGACACCCTTCTAATTCTTAA
ATTGACTATATATTAATCATAGAAGTCCTAAGGAAGGAGGAAATCCTTGGGAGAAAAGTG
TTAATAATTTACTAGTTGCAAACTGTACTTTTACCTGTGAACATCAGGTGGGTAAAAACA
TTACTCACGGTCTTTAATCTAAGAATTTCTTCCATTTTTATGGCCTGTTCTTTGGGCTTA
TTTATGATGGTTTGGAACAAAGAGGCAACCTTTGCCATTGTGATTTATACTCTTCCAACA
AAGGAAACACAGAAAGAGATAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTTTTTTTTTTTTTTCTTTG------------------------------------
------------------------------------------------ACAGCCACACCA
GACCCAAGCCACATCTGCAACCTATACCACAGCTCATGGCAACACCAGATTCTTAACCCA
GTGAGTGAGGCCAGGGATGGAACCCACATCCTCATGGATACTAGTTGGGTTCTTAATCCA
CTGAGCCACAGTGGGAACTCCACATTCTTATTACCTATTATATTTATTAGAATAATTGTA
TAATTATATAACTATATGATTGCATAATTGTATAATAATATTATAATTAGTCCTCCATTC
TGCTTTGAATACATAATTATAAAATATGCTTACCCTGTTTGACACCCTTCTAATTCTTAA
ATTGACTATATATTAATCATAGAAGTCCTAAGGAAGGAGGAAATCCTTGGGAGAAAAGTG
TTAATAATTTACTAGTTGCAAACTGTACTTTTACCTGTGAACATCAGGTGGGTAAAAACA
TTACTCACGGTCTTTAATCTAAGAATTTCTTCCATTTTTATGGCCTGTTCTTTGGGCTTA
TTTATGATGGTTTGGAACAAAGAGGCAACCTTTGCCATTGTGATTTATACTCTTCCAACA
AAGGAAACACAGAAAGAGATAAGA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               177-600, gnl|bosTau2|chr12 (42503359-42503771)
               

               
               177-600, gnl|Hg17|chr13 (102351855-102351513)
               

               
               177-600, gnl|Mm7|chr8 (4805157-4799032)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               177-600, gnl|bosTau2|chr12 (42503359-42503771)
               

               
               177-600, gnl|Hg17|chr13 (102351855-102351513)
               

               
               177-600, gnl|Mm7|chr8 (4805157-4799032)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sme (0.305437)
               

               
               ssp (0.13552)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               ssp (0.13552)

	177-600, gnl\|bosTau2\|chr12 (42503359-42503771)
	177-600, gnl\|Hg17\|chr13 (102351855-102351513)
	177-600, gnl\|Mm7\|chr8 (4805157-4799032)