Non-Coding RNA Search

Ss1.1-rssp30_k3.5

Sequence:


               
               GGGCCTCAGCGTGGACTCAGGTAAGCGGGAGAAGGAGCGCAGCATCCCCGGGCCCCTCCT
ACCCTGTGCTCAGACCTGGGCTGAGCGCGGTGCCCCACTTAGTTCTCCCTGGAGACCCCA
GTGCTCCTGAGCCCCGAGGTCTGCGTGGCGGGGTTGTATTTCAGCAGACAGTGACCTTGT
GCCACTGGTGTGGGCAGAATGAAAAAGTAGGACCCTGCCTTAAATTGGCTGGTTAATATT
ACAGAGGATTTTTTTTTTAATAAAATTTGTTGGAACGATCTAGCTCTGTGCTGTTCAGTA
CTGTAGCCACCAGCCACTTGTGTGGGTTGAGCAGGTGAAATGTGACTAGAGTGAATTGGG
ATGTGCTGTAAGTGTATATAATACACACTGGATTTCAAGACTTGGTACCAAAAAAAGAAT
GTAAAATTTACCTCACTGAAATTTTGTATTGATCGCATGTTGAGGTATTTTCAACACATT
GCATATCGAATGTACTGGGTTAAATAAAATATATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCTCAGCGTGGACTCAGGTAAGCGGGAGAAGGAGCGCAGCATCCCCGGGCCCCTCCT
ACCCTGTGCTCAGACCTGGGCTGAGCGCGGTGCCCCACTTAGTTCTCCCTGGAGACCCCA
GTGCTCCTGAGCCCCGAGGTCTGCGTGGCGGGGTTGTATTTCAGCAGACAGTGACCTTGT
GCCACTGGTGTGGGCAGAATGAAAAAGTAGGACCCTGCCTTAAATTGGCTGGTTAATATT
ACAGAGGATTTTTTTTTTAATAAAATTTGTTGGAACGATCTAGCTCTGTGCTGTTCAGTA
CTGTAGCCACCAGCCACTTGTGTGGGTTGAGCAGGTGAAATGTGACTAGAGTGAATTGGG
ATGTGCTGTAAGTGTATATAATACACACTGGATTTCAAGACTTGGTACCAAAAAAAGAAT
GTAAAATTTACCTCACTGAAATTTTGTATTGATCGCATGTTGAGGTATTTTCAACACATT
GCATATCGAATGTACTGGGTTAAATAAAATATATTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-516, gnl|bosTau2|chr9 (11727763-11727277)
               

               
               1-516, gnl|Hg17|chr6 (117698901-117699446)
               

               
               1-516, gnl|Mm7|chr10 (51843020-51843555)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-516, gnl|bosTau2|chr9 (11727763-11727277)
               

               
               1-516, gnl|Hg17|chr6 (117698901-117699446)
               

               
               1-516, gnl|Mm7|chr10 (51843020-51843555)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               sme (0.305437)
               

               
               ssp (0.271039)
               

               
               isp (0.150376)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               ssp (0.271039)
               

               
               isp (0.150376)
               

               
               ldo (0.0970026)

	1-516, gnl\|bosTau2\|chr9 (11727763-11727277)
	1-516, gnl\|Hg17\|chr6 (117698901-117699446)
	1-516, gnl\|Mm7\|chr10 (51843020-51843555)