Ss1.1-rssp31_l8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCATGGCGGCCTGTCGGAAACCGGTTCTTCTGGGACTTCGAGATGCTGCTGTGCAGGGC CACCCGACGGGGCCGGGGGCCTGGACTGCAAGCAAGCTAGGCGGCGTTCCGGACTCCCTG CCGGCCGTGGCAGCGCCGAGGCCAGTGTGTGAAGTGTGCGGACAGCCGCTTGCCCTGATC GTGCAGGTGTACTGCCCGCTGGAAGGCTCCCCGTTTCATCGGCTCCTGCACGTGTTCGCT TGTTCCCTCCCTGAGTGCCGTAGAGGCGGGGCGCGCAGTTGGAAGGTGTTCCGCTCCCAG TGCCTGCAGAAGCGAGAGGAAGAGCCACAGGACTTTCAGAAACAGGAAAACGGCCTCACA GCTGAGGATTGGTGTGAAGGTGCAGATGACTGGGGAAGTGACGGTGAGGGGACACCTTCG CCACAGCTTACCTCGGGTTTTGGAAATGATTCCAACATTGCCAGAGACAAAGACTGGACC GCCCAGCTCCAAGACCTCTGCCTGCAGGACTCTGTCCCAGGTGCTGTGCCTCCTGCGCCT TCGGGGGAAGGGCTGGCCTTGCCTCCTGTGGTGCCGCAGTTCCTGCCCTACTACATCTGT GTTGTAGATGAGGACGATTACAGGGACGTTGTCAGTCTAGATCATGCTCAGAGCCTTCTG AGGGAGTATCAGCAGAGAGAAGGCGTGGATATGCAACAGTTGCTTTCCCAGAGTCTTTCT AGTGATAGTGATGAAAAATATGAGAAGACTGTAATTAAAAGTGGAGATAAGATGTTTTAC AAATTCATGAAGAGAATTGCTGCTTGTCAGGAGCAGATTTTGAGGTATTCCTGGAGTGGA GAACCACTTTTTTTGACTTGTCCTACATCAGAAGTCACTGAGATCCCAGCCTGTAGCCAC TGTGGTGTTCGAAGGATATTTGAGTTTCAGCTTATGCCAGCGCTGGTCAGCATGCTCAGA AGTGCTAATTTAGGTCTTTCTGTGGAATTTGGAACCATTCTAATTTACACATGTGAGAAG AGTTGCTGGCCTCAAAACCATCAGACTCCCATGGAAGAATTTTGTATTATACAAGAAGAC CCAGATGAATTATTATTTAAGTAGTGCATTTTCTTTTATTTATATAAATTAAAACAAATT TTAATGTTCAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCATGGCGGCCTGTCGGAAACCGGTTCTTCTGGGACTTCGAGATGCTGCTGTGCAGGGC CACCCGACGGGGCCGGGGGCCTGGACTGCAAGCAAGCTAGGCGGCGTTCCGGACTCCCTG CCGGCCGTGGCAGCGCCGAGGCCAGTGTGTGAAGTGTGCGGACAGCCGCTTGCCCTGATC GTGCAGGTGTACTGCCCGCTGGAAGGCTCCCCGTTTCATCGGCTCCTGCACGTGTTCGCT TGTTCCCTCCCTGAGTGCCGTAGAGGCGGGGCGCGCAGTTGGAAGGTGTTCCGCTCCCAG TGCCTGCAGAAGCGAGAGGAAGAGCCACAGGACTTTCAGAAACAGGAAAACGGCCTCACA GCTGAGGATTGGTGTGAAGGTGCAGATGACTGGGGAAGTGACGGTGAGGGGACACCTTCG CCACAGCTTACCTCGGGTTTTGGAAATGATTCCAACATTGCCAGAGACAAAGACTGGACC GCCCAGCTCCAAGACCTCTGCCTGCAGGACTCTGTCCCAGGTGCTGTGCCTCCTGCGCCT TCGGGGGAAGGGCTGGCCTTGCCTCCTGTGGTGCCGCAGTTCCTGCCCTACTACATCTGT GTTGTAGATGAGGACGATTACAGGGACGTTGTCAGTCTAGATCATGCTCAGAGCCTTCTG AGGGAGTATCAGCAGAGAGAAGGCGTGGATATGCAACAGTTGCTTTCCCAGAGTCTTTCT AGTGATAGTGATGAAAAATATGAGAAGACTGTAATTAAAAGTGGAGATAAGATGTTTTAC AAATTCATGAAGAGAATTGCTGCTTGTCAGGAGCAGATTTTGAGGTATTCCTGGAGTGGA GAACCACTTTTTTTGACTTGTCCTACATCAGAAGTCACTGAGATCCCAGCCTGTAGCCAC TGTGGTGTTCGAAGGATATTTGAGTTTCAGCTTATGCCAGCGCTGGTCAGCATGCTCAGA AGTGCTAATTTAGGTCTTTCTGTGGAATTTGGAACCATTCTAATTTACACATGTGAGAAG AGTTGCTGGCCTCAAAACCATCAGACTCCCATGGAAGAATTTTGTATTATACAAGAAGAC CCAGATGAATTATTATTTAAGTAGTGCATTTTCTTTTATTTATATAAATTAAAACAAATT TTAATGTTCAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 334-452, + strand, RNAz p=0.650828 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 334-452, + strand, RNAz p=0.650828 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 108-278, gnl|bosTau2|chr18 (38010258-38010428) | |
| 108-278, gnl|canFam2|chr1 (120826074-120825924) | |
| 108-278, gnl|danRer3|chr4 (3949162-3949314) | |
| 108-278, gnl|dasNov1|scaffold_2901 (39567-39717) | |
| 108-278, gnl|echTel1|scaffold_280978 (478-628) | |
| 108-278, gnl|galGal2|chr11 (11274007-11274140) | |
| 108-278, gnl|hg17|chr19 (39587382-39587534) | |
| 108-278, gnl|Hg17|chr19 (39587390-39587560) | |
| 108-278, gnl|loxAfr1|scaffold_11966 (27612-27762) | |
| 108-278, gnl|mm7|chr7 (31083939-31083788) | |
| 108-278, gnl|Mm7|chr7 (31083930-31083760) | |
| 108-278, gnl|monDom2|scaffold_35 (1275360-1275210) | |
| 108-278, gnl|oryCun1|scaffold_159760 (10916-11066) | |
| 108-278, gnl|panTro1|chr20 (36141586-36141738) | |
| 108-278, gnl|rheMac2|chr19 (40968808-40968960) | |
| 108-278, gnl|rn3|chr1 (86731052-86730901) | |
| 108-278, gnl|tetNig1|chr13 (11070644-11070521) | |
| 334-713, gnl|bosTau2|chr18 (38011490-38011869) | |
| 334-713, gnl|Hg17|chr19 (39591900-39592255) | |
| 334-713, gnl|Mm7|chr7 (31080600-31080224) | |
| 969-1133, gnl|bosTau2|chr18 (38027760-38027924) | |
| 969-1133, gnl|canFam2|chr1 (120795902-120795767) | |
| 969-1133, gnl|canFam2|chr1 (120795719-120795893) | |
| 969-1133, gnl|danRer3|chr4 (3957827-3957962) | |
| 969-1133, gnl|dasNov1|scaffold_2901 (69200-69335) | |
| 969-1133, gnl|dasNov1|scaffold_2901 (69368-69207) | |
| 969-1133, gnl|galGal2|chr11 (11443351-11443216) | |
| 969-1133, gnl|hg17|chr11 (23348190-23348352) | |
| 969-1133, gnl|hg17|chr19 (39608729-39608864) | |
| 969-1133, gnl|Hg17|chr19 (39608730-39608894) | |
| 969-1133, gnl|loxAfr1|scaffold_11966 (51824-51959) | |
| 969-1133, gnl|loxAfr1|scaffold_11966 (52007-51826) | |
| 969-1133, gnl|mm7|chr7 (31072307-31072172) | |
| 969-1133, gnl|mm7|chr7 (50306100-50306277) | |
| 969-1133, gnl|Mm7|chr7 (31072304-31072135) | |
| 969-1133, gnl|monDom2|scaffold_35 (1269891-1269756) | |
| 969-1133, gnl|oryCun1|scaffold_101509 (133-268) | |
| 969-1133, gnl|oryCun1|scaffold_101509 (312-135) | |
| 969-1133, gnl|panTro1|chr20 (36164956-36165091) | |
| 969-1133, gnl|panTro1|chr9_random (11883533-11883695) | |
| 969-1133, gnl|rheMac2|chr19 (40991010-40991142) | |
| 969-1133, gnl|rheMac2|chr19 (40991190-40991012) | |
| 969-1133, gnl|rn3|chr1 (86718876-86718741) | |
| 969-1133, gnl|rn3|chr1 (105180645-105180827) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 108-278, gnl|bosTau2|chr18 (38010258-38010428) | |
| 108-278, gnl|canFam2|chr1 (120826074-120825924) | |
| 108-278, gnl|danRer3|chr4 (3949162-3949314) | |
| 108-278, gnl|dasNov1|scaffold_2901 (39567-39717) | |
| 108-278, gnl|echTel1|scaffold_280978 (478-628) | |
| 108-278, gnl|galGal2|chr11 (11274007-11274140) | |
| 108-278, gnl|hg17|chr19 (39587382-39587534) | |
| 108-278, gnl|Hg17|chr19 (39587390-39587560) | |
| 108-278, gnl|loxAfr1|scaffold_11966 (27612-27762) | |
| 108-278, gnl|mm7|chr7 (31083939-31083788) | |
| 108-278, gnl|Mm7|chr7 (31083930-31083760) | |
| 108-278, gnl|monDom2|scaffold_35 (1275360-1275210) | |
| 108-278, gnl|oryCun1|scaffold_159760 (10916-11066) | |
| 108-278, gnl|panTro1|chr20 (36141586-36141738) | |
| 108-278, gnl|rheMac2|chr19 (40968808-40968960) | |
| 108-278, gnl|rn3|chr1 (86731052-86730901) | |
| 108-278, gnl|tetNig1|chr13 (11070644-11070521) | |
| 334-713, gnl|bosTau2|chr18 (38011490-38011869) | |
| 334-713, gnl|Hg17|chr19 (39591900-39592255) | |
| 334-713, gnl|Mm7|chr7 (31080600-31080224) | |
| 969-1133, gnl|bosTau2|chr18 (38027760-38027924) | |
| 969-1133, gnl|canFam2|chr1 (120795902-120795767) | |
| 969-1133, gnl|canFam2|chr1 (120795719-120795893) | |
| 969-1133, gnl|danRer3|chr4 (3957827-3957962) | |
| 969-1133, gnl|dasNov1|scaffold_2901 (69200-69335) | |
| 969-1133, gnl|dasNov1|scaffold_2901 (69368-69207) | |
| 969-1133, gnl|galGal2|chr11 (11443351-11443216) | |
| 969-1133, gnl|hg17|chr11 (23348190-23348352) | |
| 969-1133, gnl|hg17|chr19 (39608729-39608864) | |
| 969-1133, gnl|Hg17|chr19 (39608730-39608894) | |
| 969-1133, gnl|loxAfr1|scaffold_11966 (51824-51959) | |
| 969-1133, gnl|loxAfr1|scaffold_11966 (52007-51826) | |
| 969-1133, gnl|mm7|chr7 (31072307-31072172) | |
| 969-1133, gnl|mm7|chr7 (50306100-50306277) | |
| 969-1133, gnl|Mm7|chr7 (31072304-31072135) | |
| 969-1133, gnl|monDom2|scaffold_35 (1269891-1269756) | |
| 969-1133, gnl|oryCun1|scaffold_101509 (133-268) | |
| 969-1133, gnl|oryCun1|scaffold_101509 (312-135) | |
| 969-1133, gnl|panTro1|chr20 (36164956-36165091) | |
| 969-1133, gnl|panTro1|chr9_random (11883533-11883695) | |
| 969-1133, gnl|rheMac2|chr19 (40991010-40991142) | |
| 969-1133, gnl|rheMac2|chr19 (40991190-40991012) | |
| 969-1133, gnl|rn3|chr1 (86718876-86718741) | |
| 969-1133, gnl|rn3|chr1 (105180645-105180827) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| cte (0.29274) | |
| ldo (0.194005) | |
| gul (0.177588) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| nbm (0.0993246) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| ldo (0.194005) | |
| gul (0.177588) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| nbm (0.0993246) |