Non-Coding RNA Search

Ss1.1-rssp31_m19.5.117

Sequence:


               
               GTTGCTTCTGCGTCCTGGTGCTGCGTCGCCGCGGAGCCCGTGCCGTCCTTCAGCCAAGAT
GCCCGAGGAAACCCAGACCCAAGACCAGCCGATGGAGGAGGAGGAGGTGGAGACGTTCGC
CTTCCAGGCGGAAATCGCCCAGTTGATGTCGTTGATCATCAACACTTTCTACTCGAACAA
GGAGATCTTTCTGAGGGAGCTCATTTCCAACTCGTCCGATGCTTTGGACAAGATCAGATA
CGAAAGCCTGACGGATCCCAGTAAACTAGACTCCGGGAAAGAGCTGCACATTAATCTCAT
TCCGAACAAGCAAGACCGGACCCTCACGATAGTGGACACCGGCATCGGAATGACCAAGGC
CGACTTGATCAATAACCTTGGTACGATCGCCAAGTCTGGGACCAAGGCGTTCATGGAGGC
TTTGCAGGCCGGTGCCGATATCTCGATGATTGGCCAGTTCGGTGTCGGCTTCTACTCTGC
GTACCTGGTCGCTGAGAAAGTGACCGTTATCACCAAACACAACGATGACGAGCAGTATGC
CTGGGAGTCTTCTGCAGGAGGATCTTTCACCGTTAGGACAGACACAGGAGAACCTATGGG
TCGTGGAACAAAGGTTATTCTACATCTGAAAGAAGACCAAACTGAGTACTTGGAAGAAAG
GAGAATAAAGGAGATTGTGAAGAAACACTCTCAGTTTATTGGCTACCCCATTACTCTCTT
TGTGGAGAAGGAACGTGATAAAGAAGTCAGTGACGACGAGGCGGAAGAAAAGGAAGACAA
AGAGGAAGAAAAGGAGAAAGAAGAGAAGGAATCTGAGGATAAACCGGAGATAGAAGATGT
TGGTTCTGATGAAGAGGAAGAAGAAAAGAAGGATGGTGACAAGAAGAAGAAGAAGAAGAT
CAAGGAGAAGTATATTGATCAAGAGGAACTCAACAAGACAAAGCCTATTTGGACCAGAAA
CCCCGATGACATCACTAATGAAGAGTACGGGGAGTTCTATAAGAGCTTGACCAATGACTG
GGAGGATCACTTGGCTGTGAAGCACTTTTCAGTCGAAGGGCAGTTGGAGTTCCGAGCCCT
TCTTTTCGTCCCAAGACGCGCTCCTTTCGACTTATTTGAAAACAGAAAGAAGAAGAACAA
CATCAAGCTGTATGTTCGCAGAGTGTTCATCATGGACAACTGCGAGGAGCTCATCCCTGA
GTATCTGAATTTCATTAGAGGCGTGGTGGACTCTGAGGATCTTCCTCTGAACATTTCTCG
TGAGATGTTGCAACAAAGCAAAATTTTGAAAGTCATCAGGAAGAATCTGGTCAAGAAATG
CTTAGAGCTCTTTACTGAATTGGCCGAAGATAAAGAGAATTACAAGAAGTTCTATGAGCA
GTTCTCTAAAAATATTAAGCTTGGAATACATGAAGATTCTCAAAATCGGAAGAAGCTTTC
CGAGCTGTTGAGGTACTACACTTCTGCTTCTGGCGACGAGATGGTTTCCCTCAAGGACTA
TTGCACCAGAATGAAGGAGAACCAGAAACACATCTATTACATCACAGGTGAGACCAAGGA
CCAGGTGGCCAACTCGGCCTTCGTGGAGCGTCTGCGGAAGCACGGCCTGGAGGTGATCTA
CATGATCGAGCCCATCGATGAGTACTGTGTGCAGCAGCTGAAGGAGTTTGAGGGGAAGAC
CTTAGTGTCAGTCACCAAAGAGGGCCTGGAGCTCCCGGAAGACGAAGAGGAGAAGAAGAA
ACAGGAGGAGAAGAAGACAAAGTTTGAAAACCTCTGCAAGATCATGAAGGACATCTTGGA
GAAGAAAGTGGAAAAGGTGGTTGTGTCGAACCGGTTGGTGACCTCACCATGCTGCATTGT
CACAAGCACGTACGGCTGGACAGCAAACATGGAGAGAATCATGAAGGCTCAAGCCCTGAG
AGACAACTCGACAATGGGTTACATGGCAGCAAAGAAGCACCTGGAGATAAATCCAGACCA
TTCCATCATCGAGACCCTGAGGCAAAAGGCAGAGGCGGACAAGAACGACAAGTCCGTGAA
GGATCTGGTCATCCTGCTGTACGAAACCGCTCTGCTGTCTTCTGGCTTCAGCCTGGAAGA
TCCCCAGACGCACGCCAACAGGATCTACAGGATGATCAAACTTGGTCTTGGTATTGATGA
GGACGACCCCACCGCCGACGACAGCAGCGCTGCTGTGACGGAGGAGATGCCACCCCTGGA
AGGGGACGACGACACGTCCCGCATGGAGGAAGTCGATTAGGCTCCGCCTGAGGCTTGCTT
GTCCCCTGTTAAAACGCTGTCTGCATTCCCTCTGACGATATATTTTCAAGTATTTTATTT
TTGTTAACATTTAAAGGTTGTATGGCATGACAGTTCCTTAAGGGAAAATAAGATTCCTTT
GTACTAAGTGTGACACTGTGATATTTGAGCACTAAAGCCGAGCTTGTCCTTTCCTAGTTC
CAGTTGGCTTCTTTAACAGACGGCCCTCGTGCTGTGAGGTGTGTGTACCCTGATGTTAAC
TTCTTGGTCTGTGTTCAGCTCTCAAGCGGATTCCTTAGTTGACCACCTTTTGTCACTGAA
GTGTTGTGGAGTATATCTTGATGTTTAGGAGAAAAATACTTGTTCAAGCAACGAGTAGAT
TTGGGCTCTACCTTTGAAACCTCCCATCCCCTGTAGCTGTTGACTGCATGTATCAGTCCT
CTAGGAGTTAGGATGACCCCCGTTGATGGGAGTAGCTATCCTTAGGGCTTGTTTCCAAAG
AAATGTAATGTTTAGGGACCCGAAGTCGAAAGCCCACCTAGGCATGTGGTAAAGCTGTTT
GGGAAGTAACTCTGCAAGCGTCGTGAGTGGAGATGTAGCGCCGAAGTCGCATTCTGCTTC
CGGAGTTGAAACAAATACAGATGAATTAAACAGAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGCTTCTGCGTCCTGGTGCTGCGTCGCCGCGGAGCCCGTGCCGTCCTTCAGCCAAGAT
GCCCGAGGAAACCCAGACCCAAGACCAGCCGATGGAGGAGGAGGAGGTGGAGACGTTCGC
CTTCCAGGCGGAAATCGCCCAGTTGATGTCGTTGATCATCAACACTTTCTACTCGAACAA
GGAGATCTTTCTGAGGGAGCTCATTTCCAACTCGTCCGATGCTTTGGACAAGATCAGATA
CGAAAGCCTGACGGATCCCAGTAAACTAGACTCCGGGAAAGAGCTGCACATTAATCTCAT
TCCGAACAAGCAAGACCGGACCCTCACGATAGTGGACACCGGCATCGGAATGACCAAGGC
CGACTTGATCAATAACCTTGGTACGATCGCCAAGTCTGGGACCAAGGCGTTCATGGAGGC
TTTGCAGGCCGGTGCCGATATCTCGATGATTGGCCAGTTCGGTGTCGGCTTCTACTCTGC
GTACCTGGTCGCTGAGAAAGTGACCGTTATCACCAAACACAACGATGACGAGCAGTATGC
CTGGGAGTCTTCTGCAGGAGGATCTTTCACCGTTAGGACAGACACAGGAGAACCTATGGG
TCGTGGAACAAAGGTTATTCTACATCTGAAAGAAGACCAAACTGAGTACTTGGAAGAAAG
GAGAATAAAGGAGATTGTGAAGAAACACTCTCAGTTTATTGGCTACCCCATTACTCTCTT
TGTGGAGAAGGAACGTGATAAAGAAGTCAGTGACGACGAGGCGGAAGAAAAGGAAGACAA
AGAGGAAGAAAAGGAGAAAGAAGAGAAGGAATCTGAGGATAAACCGGAGATAGAAGATGT
TGGTTCTGATGAAGAGGAAGAAGAAAAGAAGGATGGTGACAAGAAGAAGAAGAAGAAGAT
CAAGGAGAAGTATATTGATCAAGAGGAACTCAACAAGACAAAGCCTATTTGGACCAGAAA
CCCCGATGACATCACTAATGAAGAGTACGGGGAGTTCTATAAGAGCTTGACCAATGACTG
GGAGGATCACTTGGCTGTGAAGCACTTTTCAGTCGAAGGGCAGTTGGAGTTCCGAGCCCT
TCTTTTCGTCCCAAGACGCGCTCCTTTCGACTTATTTGAAAACAGAAAGAAGAAGAACAA
CATCAAGCTGTATGTTCGCAGAGTGTTCATCATGGACAACTGCGAGGAGCTCATCCCTGA
GTATCTGAATTTCATTAGAGGCGTGGTGGACTCTGAGGATCTTCCTCTGAACATTTCTCG
TGAGATGTTGCAACAAAGCAAAATTTTGAAAGTCATCAGGAAGAATCTGGTCAAGAAATG
CTTAGAGCTCTTTACTGAATTGGCCGAAGATAAAGAGAATTACAAGAAGTTCTATGAGCA
GTTCTCTAAAAATATTAAGCTTGGAATACATGAAGATTCTCAAAATCGGAAGAAGCTTTC
CGAGCTGTTGAGGTACTACACTTCTGCTTCTGGCGACGAGATGGTTTCCCTCAAGGACTA
TTGCACCAGAATGAAGGAGAACCAGAAACACATCTATTACATCACAGGTGAGACCAAGGA
CCAGGTGGCCAACTCGGCCTTCGTGGAGCGTCTGCGGAAGCACGGCCTGGAGGTGATCTA
CATGATCGAGCCCATCGATGAGTACTGTGTGCAGCAGCTGAAGGAGTTTGAGGGGAAGAC
CTTAGTGTCAGTCACCAAAGAGGGCCTGGAGCTCCCGGAAGACGAAGAGGAGAAGAAGAA
ACAGGAGGAGAAGAAGACAAAGTTTGAAAACCTCTGCAAGATCATGAAGGACATCTTGGA
GAAGAAAGTGGAAAAGGTGGTTGTGTCGAACCGGTTGGTGACCTCACCATGCTGCATTGT
CACAAGCACGTACGGCTGGACAGCAAACATGGAGAGAATCATGAAGGCTCAAGCCCTGAG
AGACAACTCGACAATGGGTTACATGGCAGCAAAGAAGCACCTGGAGATAAATCCAGACCA
TTCCATCATCGAGACCCTGAGGCAAAAGGCAGAGGCGGACAAGAACGACAAGTCCGTGAA
GGATCTGGTCATCCTGCTGTACGAAACCGCTCTGCTGTCTTCTGGCTTCAGCCTGGAAGA
TCCCCAGACGCACGCCAACAGGATCTACAGGATGATCAAACTTGGTCTTGGTATTGATGA
GGACGACCCCACCGCCGACGACAGCAGCGCTGCTGTGACGGAGGAGATGCCACCCCTGGA
AGGGGACGACGACACGTCCCGCATGGAGGAAGTCGATTAGGCTCCGCCTGAGGCTTGCTT
GTCCCCTGTTAAAACGCTGTCTGCATTCCCTCTGACGATATATTTTCAAGTATTTTATTT
TTGTTAACATTTAAAGGTTGTATGGCATGACAGTTCCTTAAGGGAAAATAAGATTCCTTT
GTACTAAGTGTGACACTGTGATATTTGAGCACTAAAGCCGAGCTTGTCCTTTCCTAGTTC
CAGTTGGCTTCTTTAACAGACGGCCCTCGTGCTGTGAGGTGTGTGTACCCTGATGTTAAC
TTCTTGGTCTGTGTTCAGCTCTCAAGCGGATTCCTTAGTTGACCACCTTTTGTCACTGAA
GTGTTGTGGAGTATATCTTGATGTTTAGGAGAAAAATACTTGTTCAAGCAACGAGTAGAT
TTGGGCTCTACCTTTGAAACCTCCCATCCCCTGTAGCTGTTGACTGCATGTATCAGTCCT
CTAGGAGTTAGGATGACCCCCGTTGATGGGAGTAGCTATCCTTAGGGCTTGTTTCCAAAG
AAATGTAATGTTTAGGGACCCGAAGTCGAAAGCCCACCTAGGCATGTGGTAAAGCTGTTT
GGGAAGTAACTCTGCAAGCGTCGTGAGTGGAGATGTAGCGCCGAAGTCGCATTCTGCTTC
CGGAGTTGAAACAAATACAGATGAATTAAACAGAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               HS90A_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               HS90A_PIG

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

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               113-232, - strand, RNAz p=0.531299
               

               
               353-592, + strand, RNAz p=0.683782
               

               
               1033-1392, - strand, RNAz p=0.776594
               

               
               2072-2191, - strand, RNAz p=0.690287

Predicted RNA structure(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               113-232, - strand, RNAz p=0.531299
               

               
               353-592, + strand, RNAz p=0.683782
               

               
               1033-1392, - strand, RNAz p=0.776594
               

               
               2072-2191, - strand, RNAz p=0.690287

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-2923, gnl|bosTau2|chr12 (33773285-33770324)
               

               
               1-2923, gnl|Hg17|chr11 (27869214-27866285)
               

               
               1-2923, gnl|Mm7|chr11 (77375009-77377992)
               


               
               2442-2702, gnl|bosTau2|chr10 (68824221-68823947)
               

               
               2442-2702, gnl|Hg17|chr11 (27866770-27866509)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-2923, gnl|bosTau2|chr12 (33773285-33770324)
               

               
               1-2923, gnl|Hg17|chr11 (27869214-27866285)
               

               
               1-2923, gnl|Mm7|chr11 (77375009-77377992)
               


               
               2442-2702, gnl|bosTau2|chr10 (68824221-68823947)
               

               
               2442-2702, gnl|Hg17|chr11 (27866770-27866509)

Expressed library(ies): 66 entry(ies)

More info

Expressed library(ies): 66 entry(ies)

Help | Less info


               
               clu (2.75185)
               

               
               cte (2.63466)
               

               
               cbr (2.55951)
               

               
               csk (1.97044)
               

               
               cmu (1.67754)
               

               
               cje (1.65235)
               

               
               fcc (1.58228)
               

               
               cbe (1.43541)
               

               
               fbs (1.22742)
               

               
               hea (1.22699)
               

               
               che (1.22683)
               

               
               ssp (1.21968)
               

               
               cki (1.15664)
               

               
               nlu (1.15009)
               

               
               cty (1.14488)
               

               
               ldo (1.06703)
               

               
               fhi (1.01747)
               

               
               spl (1.00229)
               

               
               col (0.975039)
               

               
               ste (0.946458)
               

               
               fco (0.943248)
               

               
               sme (0.91631)
               

               
               liv (0.877706)
               

               
               sin (0.874738)
               

               
               eye (0.852515)
               

               
               pgl (0.829384)
               

               
               cbl (0.803582)
               

               
               ova (0.774793)
               

               
               nep (0.7357)
               

               
               sto (0.719295)
               

               
               duo (0.691204)
               

               
               nbm (0.595948)
               

               
               ute (0.531138)
               

               
               mga (0.480615)
               

               
               tbr (0.462535)
               

               
               spc (0.453463)
               

               
               fat (0.442282)
               

               
               ski (0.440205)
               

               
               lin (0.436808)
               

               
               lnt (0.426925)
               

               
               mas (0.42061)
               

               
               cst (0.420109)
               

               
               hlv (0.417769)
               

               
               nca (0.410621)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               eep (0.367692)
               

               
               med (0.348756)
               

               
               mcp (0.341297)
               

               
               vin (0.332557)
               

               
               cag (0.302389)
               

               
               lyg (0.266205)
               

               
               tra (0.246184)
               

               
               ebs (0.236602)
               

               
               fli (0.202881)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eje (0.0988338)

Expressed library(ies): 66 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (2.75185)
               

               
               cte (2.63466)
               

               
               cbr (2.55951)
               

               
               csk (1.97044)
               

               
               cmu (1.67754)
               

               
               cje (1.65235)
               

               
               fcc (1.58228)
               

               
               cbe (1.43541)
               

               
               fbs (1.22742)
               

               
               hea (1.22699)
               

               
               che (1.22683)
               

               
               ssp (1.21968)
               

               
               cki (1.15664)
               

               
               nlu (1.15009)
               

               
               cty (1.14488)
               

               
               ldo (1.06703)
               

               
               fhi (1.01747)
               

               
               spl (1.00229)
               

               
               col (0.975039)
               

               
               ste (0.946458)
               

               
               fco (0.943248)
               

               
               sme (0.91631)
               

               
               liv (0.877706)
               

               
               sin (0.874738)
               

               
               eye (0.852515)
               

               
               pgl (0.829384)
               

               
               cbl (0.803582)
               

               
               ova (0.774793)
               

               
               nep (0.7357)
               

               
               sto (0.719295)
               

               
               duo (0.691204)
               

               
               nbm (0.595948)
               

               
               ute (0.531138)
               

               
               mga (0.480615)
               

               
               tbr (0.462535)
               

               
               spc (0.453463)
               

               
               fat (0.442282)
               

               
               ski (0.440205)
               

               
               lin (0.436808)
               

               
               lnt (0.426925)
               

               
               mas (0.42061)
               

               
               cst (0.420109)
               

               
               hlv (0.417769)
               

               
               nca (0.410621)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               eep (0.367692)
               

               
               med (0.348756)
               

               
               mcp (0.341297)
               

               
               vin (0.332557)
               

               
               cag (0.302389)
               

               
               lyg (0.266205)
               

               
               tra (0.246184)
               

               
               ebs (0.236602)
               

               
               fli (0.202881)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eje (0.0988338)

	113-232, - strand, RNAz p=0.531299
	353-592, + strand, RNAz p=0.683782
	1033-1392, - strand, RNAz p=0.776594
	2072-2191, - strand, RNAz p=0.690287

	1-2923, gnl\|bosTau2\|chr12 (33773285-33770324)
	1-2923, gnl\|Hg17\|chr11 (27869214-27866285)
	1-2923, gnl\|Mm7\|chr11 (77375009-77377992)

	2442-2702, gnl\|bosTau2\|chr10 (68824221-68823947)
	2442-2702, gnl\|Hg17\|chr11 (27866770-27866509)

	clu (2.75185)
	cte (2.63466)
	cbr (2.55951)
	csk (1.97044)
	cmu (1.67754)
	cje (1.65235)
	fcc (1.58228)
	cbe (1.43541)
	fbs (1.22742)
	hea (1.22699)
	che (1.22683)
	ssp (1.21968)
	cki (1.15664)
	nlu (1.15009)
	cty (1.14488)
	ldo (1.06703)
	fhi (1.01747)
	spl (1.00229)
	col (0.975039)
	ste (0.946458)
	fco (0.943248)
	sme (0.91631)
	liv (0.877706)
	sin (0.874738)
	eye (0.852515)
	pgl (0.829384)
	cbl (0.803582)
	ova (0.774793)
	nep (0.7357)
	sto (0.719295)
	duo (0.691204)
	nbm (0.595948)
	ute (0.531138)
	mga (0.480615)
	tbr (0.462535)
	spc (0.453463)
	fat (0.442282)
	ski (0.440205)
	lin (0.436808)
	lnt (0.426925)
	mas (0.42061)
	cst (0.420109)
	hlv (0.417769)
	nca (0.410621)
	aor (0.390549)
	elu (0.385356)
	ese (0.379507)
	eep (0.367692)
	med (0.348756)
	mcp (0.341297)
	vin (0.332557)
	cag (0.302389)
	lyg (0.266205)
	tra (0.246184)
	ebs (0.236602)
	fli (0.202881)
	ton (0.1755)
	rec (0.17307)
	bfe (0.149858)
	hyp (0.142837)
	pty (0.142714)
	pla (0.133672)
	kid (0.129735)
	thg (0.126791)
	bla (0.124347)
	eje (0.0988338)