Non-Coding RNA Search

Ss1.1-rssp31_n16.5

Sequence:


               
               TTCCTTCCCTGTAGTAGTAGGTTATACTCAGCTGGCACTCCTTGGAACTCGGGAACAGTA
CTCTTCACGAGAAGGCCACTCCATCACAGCCAGGAGCACAGTATTCCCAGGATCTCAGCA
AGGAGGGGCAGACCAAGGTCGCTTCTGATTCACTGCGACCTTCTGTAATTCCAGGCTTGC
AGCCCCAGATTCAGGACCCCACCCCTCCAGGAGCAAATCATTACAATAATAAGTTGCCTT
CAACTTCTGTAAACCAGCTAAACATGTTTAACTACGAACGTCCAAAACATTTCATCCAAT
CCCAAAACCCATGTGGCTCCAGACTGCAGCCGCCCGGACCGGAAACCTCCAGCTACTCTA
GCCAGACCAAACAGTCTTCCATTATCATCCAGCCCCGCCAGTGCACAGAGCAAAGATTTT
CTGCCTCCTCAACAGTGAGCTCTCACATCACTATGTCCTCCTCTGCTTTTCCTGCTTCTC
CCCAGCAGCCTGCTGCCTCCAACCCAGGCCAAAGGGTTACAGCCACTTATAACCAGTCCC
CAGCCAGCTTCCTCAGCTCCATATTACCATCACAGCCTGATTACAGTAGCAGTAAAATCC
CTTCCACCATGGACTCCAACTATCAGCAACCCTCAGTTGGCCAACCTGTAAATGCTAAGC
CATCCCAAAGTTTAAATGCTAAGCCCATACCAAGGACTCCTGACCATGAAATACAAGGAT
CAAAAGAAGCTCTGATTCAAGATTTGGAGAGAAAGTTAAAATGCAAGGACAGCCTTCTTC
ATAATGGAAACCAACGGCTAACATATGAGGAGAAGATGGCTCGCAGATTGCTAGGACCAC
AGAATGCAGCTGCTGTGTTTCAAGCTCAAAATGACAGTGCCGCACAAGATTCACCACAGC
AGCACAATTCAGAACATGCACGACTGCAAGTTCCTACATCACAAGTAAGAAGTAGATCAT
CCTCAAGGGGAGATGTGAATGATCAAGATGCAATCCAGGAGAAGTTTTATCCGCCTCGTT
TCATTCAAGTGCCAGAAAATATGTCAATTGAAGAAGGAAGATTCTGCAGAATGGACTTCA
AAGTAAGTGGACTGCCAGCTCCTGATGTGTCTTGGTATCTAAATGGAAGACCAGTTCAAT
CAGATGATCTTCACAAAATGATAGTGTCTGAGAAGGGTTTTCACTCACTCATCTTTGAAG
TGGTCAGAGCTTCAGATGCAGGGGCTTATGCGTGTGTTGCCAAGAACAGAGCAGGAGAAG
CCACCTTTACTGTGCAGCTGGATGTTCTGGCAAAAGAACATAGAAGAGCACCAATGTTCA
TCTACAAACCACAGAGTAAAAAAGTTTTTGAGGGAGATTCAGTGAAGCTAGAATGCCAGA
TCTCAGCTATACCTCCACCAAAACTTTTCTGGAAAAGAAATAATGAAATGGTACAATTCA
ACACTGATCGAATAAGTTTATATCATGATAACTCTGGAAGAGTTACTTTACTAATAAAAG
ATGTAAATAAGAAAGATGCTGGGTGGTATACTGTGTCTGCAGTTAATGAAGCTGGAGTGA
TCACATGTAACACGAGATTAGATGTTACAGCCCGTCCAAATCAAACTCTTCCAGCTCCTA
AGCAGTTACGTGTCCGACCAACTTTCAGCAAATATTTAGCACTTAACGGGCGAGGTTTGG
ATGTGAAACAAGCTTTTAACCCTGAAGGAGAGTTTCAGCGTCTGGCAGCTCAATCTGGAC
TCTATGAAAGTGAAGAACTTTAATAATTTTACCAACGCCGGAAAACACAACAATCAAACT
ATTAGTAATATATTCAATTAAATTTCTGAAATAAATCCATAGCTGTATTAACAGATTATG
GCTTTTATTAGGTAATACAACTAATATATATTTATATTATTATTTATCCTTTGACTCTTG
CACATTTTGTTTACCTCTGGTTTGTGAAGCCTACAGAAAATTGGGTTTGTAACTGTAGAA
GATATTAAAAATATGGGATTTTAACATTTAAGTCATACACATTTAACTACTATAGGTTAC
AAATTAATATCAATGTTTTAAACACATCTAATGCTTAATAAGATTTACTGGCACTGCTTT
CTAAATACTGTTCTACCCGTTTTCTCTGATAGGAATACTAACATGGTATATATAGATGAT
CTCAGTGTTCCTTAGCTTAATGTCAAAAGAAAATAAAATTGCAAATATTTAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTTCCCTGTAGTAGTAGGTTATACTCAGCTGGCACTCCTTGGAACTCGGGAACAGTA
CTCTTCACGAGAAGGCCACTCCATCACAGCCAGGAGCACAGTATTCCCAGGATCTCAGCA
AGGAGGGGCAGACCAAGGTCGCTTCTGATTCACTGCGACCTTCTGTAATTCCAGGCTTGC
AGCCCCAGATTCAGGACCCCACCCCTCCAGGAGCAAATCATTACAATAATAAGTTGCCTT
CAACTTCTGTAAACCAGCTAAACATGTTTAACTACGAACGTCCAAAACATTTCATCCAAT
CCCAAAACCCATGTGGCTCCAGACTGCAGCCGCCCGGACCGGAAACCTCCAGCTACTCTA
GCCAGACCAAACAGTCTTCCATTATCATCCAGCCCCGCCAGTGCACAGAGCAAAGATTTT
CTGCCTCCTCAACAGTGAGCTCTCACATCACTATGTCCTCCTCTGCTTTTCCTGCTTCTC
CCCAGCAGCCTGCTGCCTCCAACCCAGGCCAAAGGGTTACAGCCACTTATAACCAGTCCC
CAGCCAGCTTCCTCAGCTCCATATTACCATCACAGCCTGATTACAGTAGCAGTAAAATCC
CTTCCACCATGGACTCCAACTATCAGCAACCCTCAGTTGGCCAACCTGTAAATGCTAAGC
CATCCCAAAGTTTAAATGCTAAGCCCATACCAAGGACTCCTGACCATGAAATACAAGGAT
CAAAAGAAGCTCTGATTCAAGATTTGGAGAGAAAGTTAAAATGCAAGGACAGCCTTCTTC
ATAATGGAAACCAACGGCTAACATATGAGGAGAAGATGGCTCGCAGATTGCTAGGACCAC
AGAATGCAGCTGCTGTGTTTCAAGCTCAAAATGACAGTGCCGCACAAGATTCACCACAGC
AGCACAATTCAGAACATGCACGACTGCAAGTTCCTACATCACAAGTAAGAAGTAGATCAT
CCTCAAGGGGAGATGTGAATGATCAAGATGCAATCCAGGAGAAGTTTTATCCGCCTCGTT
TCATTCAAGTGCCAGAAAATATGTCAATTGAAGAAGGAAGATTCTGCAGAATGGACTTCA
AAGTAAGTGGACTGCCAGCTCCTGATGTGTCTTGGTATCTAAATGGAAGACCAGTTCAAT
CAGATGATCTTCACAAAATGATAGTGTCTGAGAAGGGTTTTCACTCACTCATCTTTGAAG
TGGTCAGAGCTTCAGATGCAGGGGCTTATGCGTGTGTTGCCAAGAACAGAGCAGGAGAAG
CCACCTTTACTGTGCAGCTGGATGTTCTGGCAAAAGAACATAGAAGAGCACCAATGTTCA
TCTACAAACCACAGAGTAAAAAAGTTTTTGAGGGAGATTCAGTGAAGCTAGAATGCCAGA
TCTCAGCTATACCTCCACCAAAACTTTTCTGGAAAAGAAATAATGAAATGGTACAATTCA
ACACTGATCGAATAAGTTTATATCATGATAACTCTGGAAGAGTTACTTTACTAATAAAAG
ATGTAAATAAGAAAGATGCTGGGTGGTATACTGTGTCTGCAGTTAATGAAGCTGGAGTGA
TCACATGTAACACGAGATTAGATGTTACAGCCCGTCCAAATCAAACTCTTCCAGCTCCTA
AGCAGTTACGTGTCCGACCAACTTTCAGCAAATATTTAGCACTTAACGGGCGAGGTTTGG
ATGTGAAACAAGCTTTTAACCCTGAAGGAGAGTTTCAGCGTCTGGCAGCTCAATCTGGAC
TCTATGAAAGTGAAGAACTTTAATAATTTTACCAACGCCGGAAAACACAACAATCAAACT
ATTAGTAATATATTCAATTAAATTTCTGAAATAAATCCATAGCTGTATTAACAGATTATG
GCTTTTATTAGGTAATACAACTAATATATATTTATATTATTATTTATCCTTTGACTCTTG
CACATTTTGTTTACCTCTGGTTTGTGAAGCCTACAGAAAATTGGGTTTGTAACTGTAGAA
GATATTAAAAATATGGGATTTTAACATTTAAGTCATACACATTTAACTACTATAGGTTAC
AAATTAATATCAATGTTTTAAACACATCTAATGCTTAATAAGATTTACTGGCACTGCTTT
CTAAATACTGTTCTACCCGTTTTCTCTGATAGGAATACTAACATGGTATATATAGATGAT
CTCAGTGTTCCTTAGCTTAATGTCAAAAGAAAATAAAATTGCAAATATTTAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|13529230|gb|AAH05376.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13529230|gb|AAH05376.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               405-622, + strand, RNAz p=0.921346

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               405-622, + strand, RNAz p=0.921346

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               52-622, gnl|bosTau2|chr7 (34455279-34455849)
               

               
               52-622, gnl|Hg17|chr5 (137234028-137234598)
               

               
               52-622, gnl|Mm7|chr18 (44714254-44714801)
               


               
               851-1524, gnl|bosTau2|chr7 (62550186-62549541)
               

               
               851-1524, gnl|Hg17|chr5 (137244405-137249801)
               


               
               1585-2214, gnl|bosTau2|chr7 (34469467-34470090)
               

               
               1585-2214, gnl|Hg17|chr5 (137250795-137251435)
               

               
               1585-2214, gnl|Mm7|chr18 (44732590-44733214)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-622, gnl|bosTau2|chr7 (34455279-34455849)
               

               
               52-622, gnl|Hg17|chr5 (137234028-137234598)
               

               
               52-622, gnl|Mm7|chr18 (44714254-44714801)
               


               
               851-1524, gnl|bosTau2|chr7 (62550186-62549541)
               

               
               851-1524, gnl|Hg17|chr5 (137244405-137249801)
               


               
               1585-2214, gnl|bosTau2|chr7 (34469467-34470090)
               

               
               1585-2214, gnl|Hg17|chr5 (137250795-137251435)
               

               
               1585-2214, gnl|Mm7|chr18 (44732590-44733214)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

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               bfe (14.0866)
               

               
               vin (12.9697)
               

               
               tbr (11.255)
               

               
               isp (9.92481)
               

               
               ste (6.76041)
               

               
               ssp (5.42079)
               

               
               ldo (4.75313)
               

               
               sme (3.66524)
               

               
               mas (2.10305)
               

               
               nms (1.06929)
               

               
               hea (1.02249)
               

               
               ctl (0.918414)
               

               
               cki (0.495704)
               

               
               nep (0.183925)
               

               
               che (0.136314)
               

               
               ret (0.128733)
               

               
               ese (0.126502)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (14.0866)
               

               
               vin (12.9697)
               

               
               tbr (11.255)
               

               
               isp (9.92481)
               

               
               ste (6.76041)
               

               
               ssp (5.42079)
               

               
               ldo (4.75313)
               

               
               sme (3.66524)
               

               
               mas (2.10305)
               

               
               nms (1.06929)
               

               
               hea (1.02249)
               

               
               ctl (0.918414)
               

               
               cki (0.495704)
               

               
               nep (0.183925)
               

               
               che (0.136314)
               

               
               ret (0.128733)
               

               
               ese (0.126502)

	52-622, gnl\|bosTau2\|chr7 (34455279-34455849)
	52-622, gnl\|Hg17\|chr5 (137234028-137234598)
	52-622, gnl\|Mm7\|chr18 (44714254-44714801)

	851-1524, gnl\|bosTau2\|chr7 (62550186-62549541)
	851-1524, gnl\|Hg17\|chr5 (137244405-137249801)

	1585-2214, gnl\|bosTau2\|chr7 (34469467-34470090)
	1585-2214, gnl\|Hg17\|chr5 (137250795-137251435)
	1585-2214, gnl\|Mm7\|chr18 (44732590-44733214)

	bfe (14.0866)
	vin (12.9697)
	tbr (11.255)
	isp (9.92481)
	ste (6.76041)
	ssp (5.42079)
	ldo (4.75313)
	sme (3.66524)
	mas (2.10305)
	nms (1.06929)
	hea (1.02249)
	ctl (0.918414)
	cki (0.495704)
	nep (0.183925)
	che (0.136314)
	ret (0.128733)
	ese (0.126502)