Ss1.1-rssp31_p4.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATAAAATTGGAGCTCTGTGTATGAATATCATTGATCATGAATTAAAAAGACATGAGCTTG GGCAAGAAGAACTGTCTAAGAAGAAGAAAGCTGTTGATGAAGATCCAGAAAACCAAATCT TGAGAAAAGATTATGAAAAAACCTTTAAAAAATACCAGGGGCTTGTGGTAAAACAGGAAC AGCTCTTACGAGTTGCTCTTTATTTGCTTCTGAATCTTGCTGAGGATACACGTACAGAAC TGAAGATGAGGAACAAGAATATAGTTCACATGCTGGTGAAGGCTCTTGATCGGGACAATT TTGAGCTGCTTATTCTTGTTGTGTCATTCTTGAAGAAACTCAGCATTTTTATGGAGAATA AAAACGATATGGTGGAAATGGATATTGTTGAAAAACTAGTAAAAATGATACCTTGTGAAC ATGAAGATCTGCTGAATATCACCCTCCGACTTTTACTAAACCTATCCTTTGACACAGGAC TGAGGAATAAGATGGTACAAGTTGGACTGCTTCCCAAACTCACTGCACTGTTAGGCAATG AAAACTACAAACAAATAGCAATGTGTGTTCTTTACCACATAAGCATGGATGACCGCTTTA AATCAATGTTTGCATACACTGACTGTATACCACAGTTAATGAAGATGCTCTTTGAATGTT CGGATGAACGAATTGACTTGGAACTCATTTCTTTCTGCATTAATCTTGCTGCTAACAAAA GGAATGTACAGCTTATCTGTGAAGGAAATGGACTGAAGATGCTCATGAAGAGGGCTCTGA AGTTCAAGGATCCACTGCTGATGAAAATGATTAGGAACATTTCCCAGCATGATGGACCAA CTAAAAATTTATTTATTGATTATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATAAAATTGGAGCTCTGTGTATGAATATCATTGATCATGAATTAAAAAGACATGAGCTTG GGCAAGAAGAACTGTCTAAGAAGAAGAAAGCTGTTGATGAAGATCCAGAAAACCAAATCT TGAGAAAAGATTATGAAAAAACCTTTAAAAAATACCAGGGGCTTGTGGTAAAACAGGAAC AGCTCTTACGAGTTGCTCTTTATTTGCTTCTGAATCTTGCTGAGGATACACGTACAGAAC TGAAGATGAGGAACAAGAATATAGTTCACATGCTGGTGAAGGCTCTTGATCGGGACAATT TTGAGCTGCTTATTCTTGTTGTGTCATTCTTGAAGAAACTCAGCATTTTTATGGAGAATA AAAACGATATGGTGGAAATGGATATTGTTGAAAAACTAGTAAAAATGATACCTTGTGAAC ATGAAGATCTGCTGAATATCACCCTCCGACTTTTACTAAACCTATCCTTTGACACAGGAC TGAGGAATAAGATGGTACAAGTTGGACTGCTTCCCAAACTCACTGCACTGTTAGGCAATG AAAACTACAAACAAATAGCAATGTGTGTTCTTTACCACATAAGCATGGATGACCGCTTTA AATCAATGTTTGCATACACTGACTGTATACCACAGTTAATGAAGATGCTCTTTGAATGTT CGGATGAACGAATTGACTTGGAACTCATTTCTTTCTGCATTAATCTTGCTGCTAACAAAA GGAATGTACAGCTTATCTGTGAAGGAAATGGACTGAAGATGCTCATGAAGAGGGCTCTGA AGTTCAAGGATCCACTGCTGATGAAAATGATTAGGAACATTTCCCAGCATGATGGACCAA CTAAAAATTTATTTATTGATTATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 743-858, + strand, RNAz p=0.987887 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 743-858, + strand, RNAz p=0.987887 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 186-373, gnl|bosTau2|chr16 (25890332-25890145) | |
| 186-373, gnl|canFam2|chr7 (31604843-31604642) | |
| 186-373, gnl|danRer3|chr20 (43163258-43163459) | |
| 186-373, gnl|dasNov1|scaffold_14294 (23422-23623) | |
| 186-373, gnl|echTel1|scaffold_220250 (2733-2535) | |
| 186-373, gnl|fr1|chrUn (76858379-76858178) | |
| 186-373, gnl|galGal2|chr8 (4996904-4996689) | |
| 186-373, gnl|hg17|chr1 (166725214-166725415) | |
| 186-373, gnl|Hg17|chr1 (166725402-166725215) | |
| 186-373, gnl|mm7|chr1 (163789201-163789000) | |
| 186-373, gnl|Mm7|chr1 (163789011-163789198) | |
| 186-373, gnl|monDom2|scaffold_16 (21243531-21243729) | |
| 186-373, gnl|oryCun1|scaffold_193316 (17876-17675) | |
| 186-373, gnl|panTro1|chr1 (148996022-148996223) | |
| 186-373, gnl|rheMac2|chr1 (199733496-199733697) | |
| 186-373, gnl|rn3|chr13 (79585328-79585127) | |
| 186-373, gnl|xenTro1|scaffold_160 (334368-334170) | |
| 533-635, gnl|bosTau2|chr16 (25856844-25856742) | |
| 533-635, gnl|canFam2|chr7 (31636495-31636374) | |
| 533-635, gnl|danRer3|chr20 (43152847-43152967) | |
| 533-635, gnl|dasNov1|scaffold_54718 (5972-6079) | |
| 533-635, gnl|echTel1|scaffold_320744 (45815-45936) | |
| 533-635, gnl|fr1|chrUn (76859026-76858912) | |
| 533-635, gnl|galGal2|chr8 (5015068-5014955) | |
| 533-635, gnl|hg17|chr1 (166692943-166693064) | |
| 533-635, gnl|Hg17|chr1 (166693056-166692954) | |
| 533-635, gnl|loxAfr1|scaffold_50518 (7157-7278) | |
| 533-635, gnl|mm7|chr1 (163812097-163811983) | |
| 533-635, gnl|Mm7|chr1 (163811989-163812091) | |
| 533-635, gnl|monDom2|scaffold_16 (21173603-21173721) | |
| 533-635, gnl|panTro1|chr1 (148963936-148964057) | |
| 533-635, gnl|rn3|chr13 (79615833-79615720) | |
| 533-635, gnl|tetNig1|chrUn_random (117238080-117237966) | |
| 533-635, gnl|xenTro1|scaffold_160 (349988-349875) | |
| 743-858, gnl|bosTau2|chr16 (25847517-25847402) | |
| 743-858, gnl|canFam2|chr7 (31646226-31646062) | |
| 743-858, gnl|danRer3|chr20 (43149987-43150136) | |
| 743-858, gnl|dasNov1|scaffold_12809 (54200-54366) | |
| 743-858, gnl|echTel1|scaffold_320744 (35073-35241) | |
| 743-858, gnl|fr1|chrUn (76859423-76859259) | |
| 743-858, gnl|galGal2|chr8 (5020810-5020651) | |
| 743-858, gnl|hg17|chr1 (166684057-166684214) | |
| 743-858, gnl|Hg17|chr1 (166684183-166684068) | |
| 743-858, gnl|loxAfr1|scaffold_204196 (716-553) | |
| 743-858, gnl|mm7|chr1 (163820927-163820772) | |
| 743-858, gnl|Mm7|chr1 (163820800-163820915) | |
| 743-858, gnl|monDom2|scaffold_16 (21164691-21164851) | |
| 743-858, gnl|oryCun1|scaffold_206152 (49525-49686) | |
| 743-858, gnl|panTro1|chr1 (148955450-148955607) | |
| 743-858, gnl|rheMac2|chr1 (199695128-199695285) | |
| 743-858, gnl|rn3|chr13 (79624597-79624443) | |
| 743-858, gnl|tetNig1|chrUn_random (117238510-117238378) | |
| 743-858, gnl|xenTro1|scaffold_160 (358591-358442) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 186-373, gnl|bosTau2|chr16 (25890332-25890145) | |
| 186-373, gnl|canFam2|chr7 (31604843-31604642) | |
| 186-373, gnl|danRer3|chr20 (43163258-43163459) | |
| 186-373, gnl|dasNov1|scaffold_14294 (23422-23623) | |
| 186-373, gnl|echTel1|scaffold_220250 (2733-2535) | |
| 186-373, gnl|fr1|chrUn (76858379-76858178) | |
| 186-373, gnl|galGal2|chr8 (4996904-4996689) | |
| 186-373, gnl|hg17|chr1 (166725214-166725415) | |
| 186-373, gnl|Hg17|chr1 (166725402-166725215) | |
| 186-373, gnl|mm7|chr1 (163789201-163789000) | |
| 186-373, gnl|Mm7|chr1 (163789011-163789198) | |
| 186-373, gnl|monDom2|scaffold_16 (21243531-21243729) | |
| 186-373, gnl|oryCun1|scaffold_193316 (17876-17675) | |
| 186-373, gnl|panTro1|chr1 (148996022-148996223) | |
| 186-373, gnl|rheMac2|chr1 (199733496-199733697) | |
| 186-373, gnl|rn3|chr13 (79585328-79585127) | |
| 186-373, gnl|xenTro1|scaffold_160 (334368-334170) | |
| 533-635, gnl|bosTau2|chr16 (25856844-25856742) | |
| 533-635, gnl|canFam2|chr7 (31636495-31636374) | |
| 533-635, gnl|danRer3|chr20 (43152847-43152967) | |
| 533-635, gnl|dasNov1|scaffold_54718 (5972-6079) | |
| 533-635, gnl|echTel1|scaffold_320744 (45815-45936) | |
| 533-635, gnl|fr1|chrUn (76859026-76858912) | |
| 533-635, gnl|galGal2|chr8 (5015068-5014955) | |
| 533-635, gnl|hg17|chr1 (166692943-166693064) | |
| 533-635, gnl|Hg17|chr1 (166693056-166692954) | |
| 533-635, gnl|loxAfr1|scaffold_50518 (7157-7278) | |
| 533-635, gnl|mm7|chr1 (163812097-163811983) | |
| 533-635, gnl|Mm7|chr1 (163811989-163812091) | |
| 533-635, gnl|monDom2|scaffold_16 (21173603-21173721) | |
| 533-635, gnl|panTro1|chr1 (148963936-148964057) | |
| 533-635, gnl|rn3|chr13 (79615833-79615720) | |
| 533-635, gnl|tetNig1|chrUn_random (117238080-117237966) | |
| 533-635, gnl|xenTro1|scaffold_160 (349988-349875) | |
| 743-858, gnl|bosTau2|chr16 (25847517-25847402) | |
| 743-858, gnl|canFam2|chr7 (31646226-31646062) | |
| 743-858, gnl|danRer3|chr20 (43149987-43150136) | |
| 743-858, gnl|dasNov1|scaffold_12809 (54200-54366) | |
| 743-858, gnl|echTel1|scaffold_320744 (35073-35241) | |
| 743-858, gnl|fr1|chrUn (76859423-76859259) | |
| 743-858, gnl|galGal2|chr8 (5020810-5020651) | |
| 743-858, gnl|hg17|chr1 (166684057-166684214) | |
| 743-858, gnl|Hg17|chr1 (166684183-166684068) | |
| 743-858, gnl|loxAfr1|scaffold_204196 (716-553) | |
| 743-858, gnl|mm7|chr1 (163820927-163820772) | |
| 743-858, gnl|Mm7|chr1 (163820800-163820915) | |
| 743-858, gnl|monDom2|scaffold_16 (21164691-21164851) | |
| 743-858, gnl|oryCun1|scaffold_206152 (49525-49686) | |
| 743-858, gnl|panTro1|chr1 (148955450-148955607) | |
| 743-858, gnl|rheMac2|chr1 (199695128-199695285) | |
| 743-858, gnl|rn3|chr13 (79624597-79624443) | |
| 743-858, gnl|tetNig1|chrUn_random (117238510-117238378) | |
| 743-858, gnl|xenTro1|scaffold_160 (358591-358442) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.169578) | |
| ssp (0.13552) | |
| ecc (0.115035) |