Non-Coding RNA Search

Ss1.1-rssp32_a24.5

Sequence:


               
               CCCTACAAAGAAAACATGGATAGGCATGGAAAAAGGGAGTGTGGTGACCTAGAAATCTGG
ACCTGAAGTGCCCTGAATTTTCAAGGGGCAGAGGAGACCGAAGCGCCACTGTTCTTCCAT
GGGGATGGGGCCTCTGACTGTCGGCATGGATCAGAGCAGGCTCCAATTAGACCCTGGTTC
TGGTGGGTTTTTTCCAACGTCTATCCATTGAGCATCCATTGGGTACATGGCGCCATACTT
GGTGCAGGAGATCTGAGCAGGATGTTGGTACTCCCGTAACTACAGGGGAAAAAAAAGATT
AGGCTTTTTCCCTTTGTGTCAATGAAACCAAAAGTGCTTCTTAAAACTTTAGCTCCATTC
ATGGCTTGTCTCACCTCAGTCTAGTATGGGAGAGACCACAGCTGAGCGATGGCGAAACAG
CCACTCAAGGCCTCAGTCAGTTCTTGTTTTAATTTCCTCACCAAATTACTGACTCAGAGC
ATAACCAAAGACCTCATCCATTCACCCCTGGTGGGTTCTTCGGGGAATTGAAGGTCGGTG
GTATCAATTAGGCGGGGCACCGGGAGCAGAGAAGCGAGGAAGGGAGAGACGTGCATGAAG
TTCTATACCTCAGCCAGCAACTGCCTTCACTTTCAACTCAAGTCCAGCCGGCAGACTCTA
GTTCTATGTCCCCCGTGCCACCCTAGGGCCTTGGCGGCTCTGGATTACACCCAACCCCGC
AGGATGCTAGTCTCAGGCTACTGATGGGTTTGATTTGACAATACATCAAACACAGCCAGG
CTTGACTGCCAGATTGTCAGCTGGGCCTGACCGAGGGCTTCTCCAGCTCCTCCAGTAAGA
TCCCTAAGATAGGATAGAGGAAATCTGGACTGGTGGGTCCGTGTATGAAAGAGACGTGTC
CCCTTTAGAAAAAGATTTTCAAGCGGATATAGAAGAAACAGTTGCTTGTGAAATATACTT
TTGTAAATAATATTTAATTTTTTAAAATAATATATTTGGTGCTGTTTTCTCAGATCCCCT
GAGAGCACTTTTTATTTTCATTTTTAAAATTCTATGGTTTCCTCTGCATTTCTTGAAGTA
TATTTTAAGGGAATCAGTGATCACCAATATACTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTACAAAGAAAACATGGATAGGCATGGAAAAAGGGAGTGTGGTGACCTAGAAATCTGG
ACCTGAAGTGCCCTGAATTTTCAAGGGGCAGAGGAGACCGAAGCGCCACTGTTCTTCCAT
GGGGATGGGGCCTCTGACTGTCGGCATGGATCAGAGCAGGCTCCAATTAGACCCTGGTTC
TGGTGGGTTTTTTCCAACGTCTATCCATTGAGCATCCATTGGGTACATGGCGCCATACTT
GGTGCAGGAGATCTGAGCAGGATGTTGGTACTCCCGTAACTACAGGGGAAAAAAAAGATT
AGGCTTTTTCCCTTTGTGTCAATGAAACCAAAAGTGCTTCTTAAAACTTTAGCTCCATTC
ATGGCTTGTCTCACCTCAGTCTAGTATGGGAGAGACCACAGCTGAGCGATGGCGAAACAG
CCACTCAAGGCCTCAGTCAGTTCTTGTTTTAATTTCCTCACCAAATTACTGACTCAGAGC
ATAACCAAAGACCTCATCCATTCACCCCTGGTGGGTTCTTCGGGGAATTGAAGGTCGGTG
GTATCAATTAGGCGGGGCACCGGGAGCAGAGAAGCGAGGAAGGGAGAGACGTGCATGAAG
TTCTATACCTCAGCCAGCAACTGCCTTCACTTTCAACTCAAGTCCAGCCGGCAGACTCTA
GTTCTATGTCCCCCGTGCCACCCTAGGGCCTTGGCGGCTCTGGATTACACCCAACCCCGC
AGGATGCTAGTCTCAGGCTACTGATGGGTTTGATTTGACAATACATCAAACACAGCCAGG
CTTGACTGCCAGATTGTCAGCTGGGCCTGACCGAGGGCTTCTCCAGCTCCTCCAGTAAGA
TCCCTAAGATAGGATAGAGGAAATCTGGACTGGTGGGTCCGTGTATGAAAGAGACGTGTC
CCCTTTAGAAAAAGATTTTCAAGCGGATATAGAAGAAACAGTTGCTTGTGAAATATACTT
TTGTAAATAATATTTAATTTTTTAAAATAATATATTTGGTGCTGTTTTCTCAGATCCCCT
GAGAGCACTTTTTATTTTCATTTTTAAAATTCTATGGTTTCCTCTGCATTTCTTGAAGTA
TATTTTAAGGGAATCAGTGATCACCAATATACTCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               997-1116, - strand, RNAz p=0.918988

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               997-1116, - strand, RNAz p=0.918988

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               13-1116, gnl|bosTau2|chr19 (5950293-5951377)
               

               
               13-1116, gnl|Hg17|chr17 (54831508-54832625)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-1116, gnl|bosTau2|chr19 (5950293-5951377)
               

               
               13-1116, gnl|Hg17|chr17 (54831508-54832625)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               cbe (0.478469)
               

               
               sme (0.305437)
               

               
               lyg (0.266205)
               

               
               bla (0.248694)
               

               
               hea (0.204499)
               

               
               sin (0.174948)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               sme (0.305437)
               

               
               lyg (0.266205)
               

               
               bla (0.248694)
               

               
               hea (0.204499)
               

               
               sin (0.174948)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)

	13-1116, gnl\|bosTau2\|chr19 (5950293-5951377)
	13-1116, gnl\|Hg17\|chr17 (54831508-54832625)

	cbe (0.478469)
	sme (0.305437)
	lyg (0.266205)
	bla (0.248694)
	hea (0.204499)
	sin (0.174948)
	ssp (0.13552)
	ute (0.132784)
	kid (0.129735)
	sug (0.127291)
	thg (0.126791)