Ss1.1-rssp32_g8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCCTGAGTTGCAACACCAGGACACCTTACCAAGGCTTATTCTACTAGAAGCAAGATGGC TGAACTCAATACTCATGTGAATGTCAAGGAAAAGATCTATGCAGTTCGATCAGTTGTTCC CAACAAAAGCAATAATGAAATAGTCCTGGTGCTACAACAGTTTGACTTTAATGTAGATAA AGCAGTGCAGGCCTTCGTGGATGGCAGTGCAATTCAAGTTCTTAAAGAATGGAATATGAC AGGAAAAAAGAAGAACAATAAGAGAAAAAGAAGCAAGTCTAAGCAGCATCAAGGCAACAA AGAAGCGAAAGACAAGGCAGAGAGGCCGGACGCAGGTCCCCTGCAGCCGCCGGCGGCGCC ACAGATACAGAATGGCCACGTCAACGGCTGCGAGAAGGACAGCTCATCCACTGACTCCGC CAGTGAAAAACCAGCTCCTGCCCCTCGTGAGAAAAAGATCTCGATACTCGAGGAACCTTC AAAGGCACTCCGTGGGGTCACAGGCCCAAATATTGAGAAATCGGTGAAGGATTTACAGCG CTGCACTGTGTCTCTAACTAGATATCGCGTCATGATCAAGGAAGAAGTGGATAGTTCAGT GAAGAAGATCAAAGCTGCCTTTGCTGAATTACACAACTGCATCATTGACAAAGAAGTTTC ATTAATGGCAGAAATGGATAAAGTTAAAGAAGAAGCCATGGAAATCCTGACGGCTCGTCA AAAGAAAGCAGAAGAACTAAAGAGACTTACTGATCTAGCCAGTCAGATGGCAGAGATGCA GCTGGCCGAACTCAGGGCAGAAATTAAGCACTTTGTCAGCGAGCGTAAATATGATGAAGA GCTCGGGAAAGCTGCCCGGTTCTCCTGTGACATTGAACAGCTAAAGGCCCAAATCATGCT CTGCGGAGAAATTACACATCCAAAGAACAACTATTCCTCAAGAACTCCCTGCAGCTCCCT GCTGCCGCTGCTGAACGCTCACGCAACCACCTCTGGAAAACAGAGTAACTTCACCCGAAA ATCATCCAGTCACACCAAACCCTCCGAGGGGAAAGCAGCAAACCCCAAAATGGCGAGCAA CCTTCCCAGCACTGCGGACAGCTCTCACCAGACCGCACCGGCTAATAAGCAGAATGGATC TGCTAGTCAACGACGAAGATTTAATCCGCAGTATCACAACAACAGGCTGAACGGATCTGC CAAGCCACAGGGCAGTGGTAACGACAACGACCCGATGGGGAAAGGCAACAACCGCCACGA ACACAGAAGACAGCCACACAACGGCTTCCGTCCCAAAAACAAGGGCGGCGCCAAAAACCA AGAAGCCTCTTTGGGGACAAAGACCCCCGAGGCCCCGGCCCATCCGGAAAAGCCCCGGCG AAGGCAGCACGCTGCAGACAACTCGGAAGCCAGGCCTTTCCGGGGAAACGTCTCCAGGGT TTCACAGTGCAATCTCTGCCCCACGAGAATAGAAGTTTCCACGGAGGCTGCCGTCCTCTC TGTCCCAGCTGTGACATTGGTGGCCTGAGCTCGGAGAGAAAAAAAAGGAAAGAAAGAAAA GCAGTTTTCACTCAGTTTTGGATCCCCGCCCGAGGTGCTGACCCAGTTCGCTGCCAAAAG AGAGTCAGTCTGAATCTACAAACCCTGTACGGCTGTGGCATCCTGTCTTAATCATTTTTA CTAATTCTAATAATCAGCTCTAGCTTGCTTCATATCTTCCATGGCTTTGCTTGATCTGTT GGCGCTTTTTCTCATCAGGACATTGCAGCATTTTAGCCAGGCAGTATTTACTCATTTGTT AGGAAAATGGAGGTTGTGGCTACAGATCAGAGGCTCAGTAGCAACCTATGTTGTAGCAGT GACGTCAATCCATTGATCGTCTTTAGAGAGTTAATGTGGAAAACAAAATTCTTATTGATC AGACAAACATGATCTGCTGAAGACACGTGCGCTTTTGTAGAATTTAACATCTGGTGTTTT TCTGAAAAATATATATATACATATATTGCTTTATTTGAAACAAATTAAAATATGCTGCAT TTGAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCCTGAGTTGCAACACCAGGACACCTTACCAAGGCTTATTCTACTAGAAGCAAGATGGC TGAACTCAATACTCATGTGAATGTCAAGGAAAAGATCTATGCAGTTCGATCAGTTGTTCC CAACAAAAGCAATAATGAAATAGTCCTGGTGCTACAACAGTTTGACTTTAATGTAGATAA AGCAGTGCAGGCCTTCGTGGATGGCAGTGCAATTCAAGTTCTTAAAGAATGGAATATGAC AGGAAAAAAGAAGAACAATAAGAGAAAAAGAAGCAAGTCTAAGCAGCATCAAGGCAACAA AGAAGCGAAAGACAAGGCAGAGAGGCCGGACGCAGGTCCCCTGCAGCCGCCGGCGGCGCC ACAGATACAGAATGGCCACGTCAACGGCTGCGAGAAGGACAGCTCATCCACTGACTCCGC CAGTGAAAAACCAGCTCCTGCCCCTCGTGAGAAAAAGATCTCGATACTCGAGGAACCTTC AAAGGCACTCCGTGGGGTCACAGGCCCAAATATTGAGAAATCGGTGAAGGATTTACAGCG CTGCACTGTGTCTCTAACTAGATATCGCGTCATGATCAAGGAAGAAGTGGATAGTTCAGT GAAGAAGATCAAAGCTGCCTTTGCTGAATTACACAACTGCATCATTGACAAAGAAGTTTC ATTAATGGCAGAAATGGATAAAGTTAAAGAAGAAGCCATGGAAATCCTGACGGCTCGTCA AAAGAAAGCAGAAGAACTAAAGAGACTTACTGATCTAGCCAGTCAGATGGCAGAGATGCA GCTGGCCGAACTCAGGGCAGAAATTAAGCACTTTGTCAGCGAGCGTAAATATGATGAAGA GCTCGGGAAAGCTGCCCGGTTCTCCTGTGACATTGAACAGCTAAAGGCCCAAATCATGCT CTGCGGAGAAATTACACATCCAAAGAACAACTATTCCTCAAGAACTCCCTGCAGCTCCCT GCTGCCGCTGCTGAACGCTCACGCAACCACCTCTGGAAAACAGAGTAACTTCACCCGAAA ATCATCCAGTCACACCAAACCCTCCGAGGGGAAAGCAGCAAACCCCAAAATGGCGAGCAA CCTTCCCAGCACTGCGGACAGCTCTCACCAGACCGCACCGGCTAATAAGCAGAATGGATC TGCTAGTCAACGACGAAGATTTAATCCGCAGTATCACAACAACAGGCTGAACGGATCTGC CAAGCCACAGGGCAGTGGTAACGACAACGACCCGATGGGGAAAGGCAACAACCGCCACGA ACACAGAAGACAGCCACACAACGGCTTCCGTCCCAAAAACAAGGGCGGCGCCAAAAACCA AGAAGCCTCTTTGGGGACAAAGACCCCCGAGGCCCCGGCCCATCCGGAAAAGCCCCGGCG AAGGCAGCACGCTGCAGACAACTCGGAAGCCAGGCCTTTCCGGGGAAACGTCTCCAGGGT TTCACAGTGCAATCTCTGCCCCACGAGAATAGAAGTTTCCACGGAGGCTGCCGTCCTCTC TGTCCCAGCTGTGACATTGGTGGCCTGAGCTCGGAGAGAAAAAAAAGGAAAGAAAGAAAA GCAGTTTTCACTCAGTTTTGGATCCCCGCCCGAGGTGCTGACCCAGTTCGCTGCCAAAAG AGAGTCAGTCTGAATCTACAAACCCTGTACGGCTGTGGCATCCTGTCTTAATCATTTTTA CTAATTCTAATAATCAGCTCTAGCTTGCTTCATATCTTCCATGGCTTTGCTTGATCTGTT GGCGCTTTTTCTCATCAGGACATTGCAGCATTTTAGCCAGGCAGTATTTACTCATTTGTT AGGAAAATGGAGGTTGTGGCTACAGATCAGAGGCTCAGTAGCAACCTATGTTGTAGCAGT GACGTCAATCCATTGATCGTCTTTAGAGAGTTAATGTGGAAAACAAAATTCTTATTGATC AGACAAACATGATCTGCTGAAGACACGTGCGCTTTTGTAGAATTTAACATCTGGTGTTTT TCTGAAAAATATATATATACATATATTGCTTTATTTGAAACAAATTAAAATATGCTGCAT TTGAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 385-1449, - strand, RNAz p=0.86571 | |
| 699-808, + strand, RNAz p=0.965651 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 385-1449, - strand, RNAz p=0.86571 | |
| 699-808, + strand, RNAz p=0.965651 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 93-204, gnl|bosTau2|chr11 (43648354-43648465) | |
| 93-204, gnl|canFam2|chr37 (12506189-12506334) | |
| 93-204, gnl|danRer3|chrNA (232411574-232411699) | |
| 93-204, gnl|dasNov1|scaffold_18918 (16522-16401) | |
| 93-204, gnl|echTel1|scaffold_320557 (36459-36593) | |
| 93-204, gnl|fr1|chrUn (230146271-230146396) | |
| 93-204, gnl|hg17|chr2 (201102527-201102680) | |
| 93-204, gnl|Hg17|chr2 (201102538-201102649) | |
| 93-204, gnl|loxAfr1|scaffold_9848 (28784-28635) | |
| 93-204, gnl|mm7|chr1 (58130219-58130368) | |
| 93-204, gnl|Mm7|chr1 (58130227-58130338) | |
| 93-204, gnl|monDom2|scaffold_2 (110807469-110807618) | |
| 93-204, gnl|oryCun1|scaffold_205598 (13949-13804) | |
| 93-204, gnl|panTro1|chr13 (91078095-91078250) | |
| 93-204, gnl|rheMac2|chr12 (64007006-64007156) | |
| 93-204, gnl|rn3|chr9_random (674018-674154) | |
| 93-204, gnl|tetNig1|chr9 (8602945-8603095) | |
| 93-204, gnl|xenTro1|scaffold_133 (2122199-2122322) | |
| 252-504, gnl|bosTau2|chr11 (43655773-43656022) | |
| 252-504, gnl|Hg17|chr2 (201109477-201109726) | |
| 252-504, gnl|Mm7|chr1 (58136422-58136671) | |
| 509-956, gnl|bosTau2|chr13 (24679556-24680002) | |
| 509-956, gnl|Hg17|chr12 (48180125-48204776) | |
| 699-808, gnl|bosTau2|chr11 (43708648-43708757) | |
| 699-808, gnl|canFam2|chr37 (12554980-12555137) | |
| 699-808, gnl|dasNov1|scaffold_5555 (127444-127287) | |
| 699-808, gnl|echTel1|scaffold_313898 (6967-7124) | |
| 699-808, gnl|galGal2|chr7 (12058475-12058632) | |
| 699-808, gnl|hg17|chr2 (201157477-201157634) | |
| 699-808, gnl|Hg17|chr2 (201157519-201157628) | |
| 699-808, gnl|mm7|chr1 (58188588-58188748) | |
| 699-808, gnl|Mm7|chr1 (58188633-58188742) | |
| 699-808, gnl|monDom2|scaffold_2 (110880530-110880687) | |
| 699-808, gnl|oryCun1|scaffold_191493 (77504-77347) | |
| 699-808, gnl|panTro1|chr13 (91133500-91133658) | |
| 699-808, gnl|rheMac2|chr12 (64062746-64062903) | |
| 699-808, gnl|rn3|chr9 (56744986-56745143) | |
| 1131-2044, gnl|bosTau2|chr11 (43717286-43718190) | |
| 1131-2044, gnl|Hg17|chr2 (201167863-201168759) | |
| 1131-2044, gnl|Mm7|chr1 (58196790-58197686) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 93-204, gnl|bosTau2|chr11 (43648354-43648465) | |
| 93-204, gnl|canFam2|chr37 (12506189-12506334) | |
| 93-204, gnl|danRer3|chrNA (232411574-232411699) | |
| 93-204, gnl|dasNov1|scaffold_18918 (16522-16401) | |
| 93-204, gnl|echTel1|scaffold_320557 (36459-36593) | |
| 93-204, gnl|fr1|chrUn (230146271-230146396) | |
| 93-204, gnl|hg17|chr2 (201102527-201102680) | |
| 93-204, gnl|Hg17|chr2 (201102538-201102649) | |
| 93-204, gnl|loxAfr1|scaffold_9848 (28784-28635) | |
| 93-204, gnl|mm7|chr1 (58130219-58130368) | |
| 93-204, gnl|Mm7|chr1 (58130227-58130338) | |
| 93-204, gnl|monDom2|scaffold_2 (110807469-110807618) | |
| 93-204, gnl|oryCun1|scaffold_205598 (13949-13804) | |
| 93-204, gnl|panTro1|chr13 (91078095-91078250) | |
| 93-204, gnl|rheMac2|chr12 (64007006-64007156) | |
| 93-204, gnl|rn3|chr9_random (674018-674154) | |
| 93-204, gnl|tetNig1|chr9 (8602945-8603095) | |
| 93-204, gnl|xenTro1|scaffold_133 (2122199-2122322) | |
| 252-504, gnl|bosTau2|chr11 (43655773-43656022) | |
| 252-504, gnl|Hg17|chr2 (201109477-201109726) | |
| 252-504, gnl|Mm7|chr1 (58136422-58136671) | |
| 509-956, gnl|bosTau2|chr13 (24679556-24680002) | |
| 509-956, gnl|Hg17|chr12 (48180125-48204776) | |
| 699-808, gnl|bosTau2|chr11 (43708648-43708757) | |
| 699-808, gnl|canFam2|chr37 (12554980-12555137) | |
| 699-808, gnl|dasNov1|scaffold_5555 (127444-127287) | |
| 699-808, gnl|echTel1|scaffold_313898 (6967-7124) | |
| 699-808, gnl|galGal2|chr7 (12058475-12058632) | |
| 699-808, gnl|hg17|chr2 (201157477-201157634) | |
| 699-808, gnl|Hg17|chr2 (201157519-201157628) | |
| 699-808, gnl|mm7|chr1 (58188588-58188748) | |
| 699-808, gnl|Mm7|chr1 (58188633-58188742) | |
| 699-808, gnl|monDom2|scaffold_2 (110880530-110880687) | |
| 699-808, gnl|oryCun1|scaffold_191493 (77504-77347) | |
| 699-808, gnl|panTro1|chr13 (91133500-91133658) | |
| 699-808, gnl|rheMac2|chr12 (64062746-64062903) | |
| 699-808, gnl|rn3|chr9 (56744986-56745143) | |
| 1131-2044, gnl|bosTau2|chr11 (43717286-43718190) | |
| 1131-2044, gnl|Hg17|chr2 (201167863-201168759) | |
| 1131-2044, gnl|Mm7|chr1 (58196790-58197686) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| sin (0.69979) | |
| lyg (0.532411) | |
| amn (0.417711) | |
| bla (0.373042) | |
| sag (0.36543) | |
| cty (0.31224) | |
| ski (0.29347) | |
| cst (0.280073) | |
| ova (0.258264) | |
| eru (0.240096) | |
| tes (0.207814) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| fco (0.157208) | |
| lin (0.145603) | |
| csk (0.140746) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| jca (0.11396) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.69979) | |
| lyg (0.532411) | |
| amn (0.417711) | |
| bla (0.373042) | |
| sag (0.36543) | |
| cty (0.31224) | |
| ski (0.29347) | |
| cst (0.280073) | |
| ova (0.258264) | |
| eru (0.240096) | |
| tes (0.207814) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| fco (0.157208) | |
| lin (0.145603) | |
| csk (0.140746) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| jca (0.11396) |