Non-Coding RNA Search

Ss1.1-rssp33_b19.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTATTGTGCAAAAATTAATTCTTTCTTTTTATTCTTTATTTCT
TATTTCTTTATTTTCATATTGAAACATAGCATTTTGTCCTTGTCATTTTCTGTGAAGCCC
ACTTCACCGTCCTGTAGATGTTACAAATATGCTTCTGTTTTCGCCTAGGTTTTTGGTTAT
GTTGTTTACATATTTGTTATATTTAACTCCGGTCCATCCAGAATTTTGGGCGAGGTCAGG
GTCTGGCGTGAGATAAACATCGCAGTCAGTTCTTCTCTATACCGATAACTCGTAATAAGA
CTTCTTAAATAATTATTAAATATTAAATAATGTGATTCAGTTGCTTGGTCATGGATTAAT
TATTTGTGGTGTTTTAAATCTCTTTCTAGAATCTTTTTTATTCAGTTGATCAGTTCTCTG
TTTTAGAGCCAATTACATAGGATCTTGGTTATCACAGTAGTATATTCGCCCCTTGACATT
TGTAGAGAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTATTGTGCAAAAATTAATTCTTTCTTTTTATTCTTTATTTCT
TATTTCTTTATTTTCATATTGAAACATAGCATTTTGTCCTTGTCATTTTCTGTGAAGCCC
ACTTCACCGTCCTGTAGATGTTACAAATATGCTTCTGTTTTCGCCTAGGTTTTTGGTTAT
GTTGTTTACATATTTGTTATATTTAACTCCGGTCCATCCAGAATTTTGGGCGAGGTCAGG
GTCTGGCGTGAGATAAACATCGCAGTCAGTTCTTCTCTATACCGATAACTCGTAATAAGA
CTTCTTAAATAATTATTAAATATTAAATAATGTGATTCAGTTGCTTGGTCATGGATTAAT
TATTTGTGGTGTTTTAAATCTCTTTCTAGAATCTTTTTTATTCAGTTGATCAGTTCTCTG
TTTTAGAGCCAATTACATAGGATCTTGGTTATCACAGTAGTATATTCGCCCCTTGACATT
TGTAGAGAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               63-186, gnl|bosTau2|chrX (32797888-32797767)
               

               
               63-186, gnl|Hg17|chr12 (49639116-49639546)
               


               
               219-500, gnl|bosTau2|chrX (32797758-32797472)
               

               
               219-500, gnl|Hg17|chr12 (49639555-49640170)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               63-186, gnl|bosTau2|chrX (32797888-32797767)
               

               
               63-186, gnl|Hg17|chr12 (49639116-49639546)
               


               
               219-500, gnl|bosTau2|chrX (32797758-32797472)
               

               
               219-500, gnl|Hg17|chr12 (49639555-49640170)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ssp (0.13552)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)
               

               
               eep (0.122564)

	63-186, gnl\|bosTau2\|chrX (32797888-32797767)
	63-186, gnl\|Hg17\|chr12 (49639116-49639546)

	219-500, gnl\|bosTau2\|chrX (32797758-32797472)
	219-500, gnl\|Hg17\|chr12 (49639555-49640170)