Non-Coding RNA Search

Ss1.1-rssp33_d17.5

Sequence:


               
               AGGTGGTTTTTTCCCTGCAACTCTTTCTTTGCTTATGTAGTAAACATTTTCAAGGAATGC
TCTTCTAAGGAAATACTACACATCTAAAGCTCTTTTTCTTTTTTTGATGTCTGTACTTGT
AAAAATGTCTCCTTGTATATAAGCTAAATTTTTTTTATTCATTTATTTAGCCTGACAGCC
CGGGTAGAAGTAATTATTTGGAGGGTACATGTAGTTGGGTCACTGATTCATTTTATTAAC
TCTGAGTGAAACGTTTTCTTTTTTAAAAATCCGAATTATTTTTACCCTCTTTGTCACAAA
GAGGTAAAAATCACTTGAAAATACGTAGTCGTATAGTATTGTCTGAGAAGCAGTGATATT
CTATAAAATCATGAGATTGTAGCTTAAAGAGATCCATCTCTTTCCTCCACTCTGAGATAT
AAGGGCTAAGCCTTCAGGTTTTTAGGTAGCATTATGTTGGTTGACTTGCTTCTCAGAGCT
GATGTCACACTCCCTCAGAGGCTCCTTTGCCCGGAAAGCTTTCGGTATTGTTTGTTTTGT
TCATAGAGTTGTGGAGCAGTATTGGGGAAAAACAGCAGAACGACGCGTATCAGTGTCTTC
AGATCGGAACTGCTTTGCAGATATCAGACCACCTCCTGTTGATAGGAAGTCACCATAGTA
TATTTTGTGTATTGTAAACATAAGGCATTTCATACTTTGAAGATTCTTATGGTCTGTGTG
CTTTCACTATCGTTAAGACTCCTTAAAATTAAATGTGAGATTGGTCTTTGTTTTCTTCCT
TTCCTCTCATTAGCGTGTCAGATAAAATGCTAAATAAAACTCCAACTTTCTCAATAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTGGTTTTTTCCCTGCAACTCTTTCTTTGCTTATGTAGTAAACATTTTCAAGGAATGC
TCTTCTAAGGAAATACTACACATCTAAAGCTCTTTTTCTTTTTTTGATGTCTGTACTTGT
AAAAATGTCTCCTTGTATATAAGCTAAATTTTTTTTATTCATTTATTTAGCCTGACAGCC
CGGGTAGAAGTAATTATTTGGAGGGTACATGTAGTTGGGTCACTGATTCATTTTATTAAC
TCTGAGTGAAACGTTTTCTTTTTTAAAAATCCGAATTATTTTTACCCTCTTTGTCACAAA
GAGGTAAAAATCACTTGAAAATACGTAGTCGTATAGTATTGTCTGAGAAGCAGTGATATT
CTATAAAATCATGAGATTGTAGCTTAAAGAGATCCATCTCTTTCCTCCACTCTGAGATAT
AAGGGCTAAGCCTTCAGGTTTTTAGGTAGCATTATGTTGGTTGACTTGCTTCTCAGAGCT
GATGTCACACTCCCTCAGAGGCTCCTTTGCCCGGAAAGCTTTCGGTATTGTTTGTTTTGT
TCATAGAGTTGTGGAGCAGTATTGGGGAAAAACAGCAGAACGACGCGTATCAGTGTCTTC
AGATCGGAACTGCTTTGCAGATATCAGACCACCTCCTGTTGATAGGAAGTCACCATAGTA
TATTTTGTGTATTGTAAACATAAGGCATTTCATACTTTGAAGATTCTTATGGTCTGTGTG
CTTTCACTATCGTTAAGACTCCTTAAAATTAAATGTGAGATTGGTCTTTGTTTTCTTCCT
TTCCTCTCATTAGCGTGTCAGATAAAATGCTAAATAAAACTCCAACTTTCTCAATAAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               1-464, gnl|bosTau2|chr1 (53367551-53368031)
               

               
               1-464, gnl|Hg17|chrX (44139127-44138317)
               

               
               1-464, gnl|Mm7|chrX (15990551-15990099)
               


               
               540-836, gnl|bosTau2|chr10 (38914560-38914845)
               

               
               540-836, gnl|Hg17|chrX (44138219-44137933)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-464, gnl|bosTau2|chr1 (53367551-53368031)
               

               
               1-464, gnl|Hg17|chrX (44139127-44138317)
               

               
               1-464, gnl|Mm7|chrX (15990551-15990099)
               


               
               540-836, gnl|bosTau2|chr10 (38914560-38914845)
               

               
               540-836, gnl|Hg17|chrX (44138219-44137933)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               cmu (0.372787)
               

               
               mgp (0.230681)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.372787)
               

               
               mgp (0.230681)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)

	1-464, gnl\|bosTau2\|chr1 (53367551-53368031)
	1-464, gnl\|Hg17\|chrX (44139127-44138317)
	1-464, gnl\|Mm7\|chrX (15990551-15990099)

	540-836, gnl\|bosTau2\|chr10 (38914560-38914845)
	540-836, gnl\|Hg17\|chrX (44138219-44137933)

	cmu (0.372787)
	mgp (0.230681)
	ill (0.175593)
	rec (0.17307)
	fhi (0.169578)
	fat (0.147427)
	lin (0.145603)
	ssp (0.13552)
	ova (0.129132)