Ss1.1-rssp33_j11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGATTAAATTAGAGGGTATTATTACTCGGGTAGAGACTTATCTCAACGAGAATTTGAGA AAGCGCTTGGACCAAGTAGAACAGGAACTCAATGAACTGAGAGAGACAGAAGGGGGTACT GTTCTCACTGCTACAACCTCAGAACTTGAAGCCATCAATAAAAGAGTAAAAGATACCATG GCACGATCAGAAGATTTGGACAATTCCATCGATAAGACAGAAGCTGGAATTAAGGAGTTG CAGAAGAGTATGGAGCGCTGGAAAAATATGGAAAAAGAACACATGGATGCTATAAATCAT GATACTAAAGAACTAGAAAAGATGACAAACCGACAAGGCATGCTACTGAAGAAGAAAGAA GAGTGTATGAAGAAAATTCGAGAACTTGGATCACTTCCCCAGGAAGCATTTGAAAAATAC CAGACACTGAGCCTCAAACAGTTGTTCCGAAAACTTGAACAATGCAACACAGAATTGAAG AAGTACAGCCATGTTAACAAAAAAGCTTTAGATCAGTTTGTAAATTTCTCTGAGCAGAAA GAAAAGTTAATAAAGCGACAGGAAGAGTTGGATAGGGGGTACAAATCAATCATGGAACTG ATGAATGTACTTGAACTTCGAAAATATGAAGCTATTCAGTTAACTTTCAAACAGGTATCC AAAAACTTCAGTGAAGTATTCCAGAAGTTGGTACCTGGTGGCAAAGCTACTTTGGTGATG AAGAAAGGAGATGTGGAGGGCAGTCAGTCTCAGGATGAAGGAGAAGGGAGTGGTGAAAGT GAGAGGGGCTCTGGATCACAAAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGA ATTAGGGTGTCATTTACAGGAAAACAAGGTGAAATGAGAGAGATGCAGCAGCTTTCAGGT GGACAGAAATCCTTGGTAGCTCTTGCTCTGATTTTTGCCATTCAGAAATGTGACCCAGCT CCTTTTTACTTGTTTGATGAGATTGACCAGGCCCTAGATGCTCAGCACAGAAAGGCTGTG TCAGATATGATTATGGAACTTGCTGTACATGCTCAATTCATTACAACTACTTTTAGGCCT GAATTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAGGTTAGTCAT ATTGATGTGATCACAGCAGAAATGGCCAAAGATTTTGTGGAAGATGATACCACTCATGGT TAATTGGAAAATATTGCCCACTGGTTTGGAAGATGTGTATAGTAACATGATTCTTATACC AGGAACTGTAAATTTAAACCTAAATATCTGGTAATTATTAATAGCCTTCAGACATAGAGC ATACATAGTCCTTTTATATTACTGTCATTGTATTTTATAATGTACTCTGTAATGTTACAG TTTTTACTTATAGCTTGAGAATTTTATTTCCCACACAACTCTTTGTAAAGTGTCCTCCTA TTTTACATCTTTTGAAATGTGGTAAATATTCTTTCCTAATTATTTTATCAATTATATTGC CTCTTTTATAGCTTCAATTAAATGATTGGTTTTATGACTAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGATTAAATTAGAGGGTATTATTACTCGGGTAGAGACTTATCTCAACGAGAATTTGAGA AAGCGCTTGGACCAAGTAGAACAGGAACTCAATGAACTGAGAGAGACAGAAGGGGGTACT GTTCTCACTGCTACAACCTCAGAACTTGAAGCCATCAATAAAAGAGTAAAAGATACCATG GCACGATCAGAAGATTTGGACAATTCCATCGATAAGACAGAAGCTGGAATTAAGGAGTTG CAGAAGAGTATGGAGCGCTGGAAAAATATGGAAAAAGAACACATGGATGCTATAAATCAT GATACTAAAGAACTAGAAAAGATGACAAACCGACAAGGCATGCTACTGAAGAAGAAAGAA GAGTGTATGAAGAAAATTCGAGAACTTGGATCACTTCCCCAGGAAGCATTTGAAAAATAC CAGACACTGAGCCTCAAACAGTTGTTCCGAAAACTTGAACAATGCAACACAGAATTGAAG AAGTACAGCCATGTTAACAAAAAAGCTTTAGATCAGTTTGTAAATTTCTCTGAGCAGAAA GAAAAGTTAATAAAGCGACAGGAAGAGTTGGATAGGGGGTACAAATCAATCATGGAACTG ATGAATGTACTTGAACTTCGAAAATATGAAGCTATTCAGTTAACTTTCAAACAGGTATCC AAAAACTTCAGTGAAGTATTCCAGAAGTTGGTACCTGGTGGCAAAGCTACTTTGGTGATG AAGAAAGGAGATGTGGAGGGCAGTCAGTCTCAGGATGAAGGAGAAGGGAGTGGTGAAAGT GAGAGGGGCTCTGGATCACAAAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGA ATTAGGGTGTCATTTACAGGAAAACAAGGTGAAATGAGAGAGATGCAGCAGCTTTCAGGT GGACAGAAATCCTTGGTAGCTCTTGCTCTGATTTTTGCCATTCAGAAATGTGACCCAGCT CCTTTTTACTTGTTTGATGAGATTGACCAGGCCCTAGATGCTCAGCACAGAAAGGCTGTG TCAGATATGATTATGGAACTTGCTGTACATGCTCAATTCATTACAACTACTTTTAGGCCT GAATTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAGGTTAGTCAT ATTGATGTGATCACAGCAGAAATGGCCAAAGATTTTGTGGAAGATGATACCACTCATGGT TAATTGGAAAATATTGCCCACTGGTTTGGAAGATGTGTATAGTAACATGATTCTTATACC AGGAACTGTAAATTTAAACCTAAATATCTGGTAATTATTAATAGCCTTCAGACATAGAGC ATACATAGTCCTTTTATATTACTGTCATTGTATTTTATAATGTACTCTGTAATGTTACAG TTTTTACTTATAGCTTGAGAATTTTATTTCCCACACAACTCTTTGTAAAGTGTCCTCCTA TTTTACATCTTTTGAAATGTGGTAAATATTCTTTCCTAATTATTTTATCAATTATATTGC CTCTTTTATAGCTTCAATTAAATGATTGGTTTTATGACTAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 192-441, gnl|bosTau2|chr26 (19136779-19136530) | |
| 192-441, gnl|canFam2|chr28 (24925648-24925931) | |
| 192-441, gnl|danRer3|chr22 (41038823-41039084) | |
| 192-441, gnl|dasNov1|scaffold_23584 (45392-45111) | |
| 192-441, gnl|echTel1|scaffold_207467 (385-632) | |
| 192-441, gnl|fr1|chrUn (226440450-226440187) | |
| 192-441, gnl|galGal2|chr6 (25074180-25074450) | |
| 192-441, gnl|hg17|chr10 (112351372-112351644) | |
| 192-441, gnl|Hg17|chr10 (112351383-112351632) | |
| 192-441, gnl|loxAfr1|scaffold_86752 (622-342) | |
| 192-441, gnl|mm7|chr19 (53539784-53540070) | |
| 192-441, gnl|Mm7|chr19 (53539799-53540048) | |
| 192-441, gnl|monDom2|scaffold_14 (52593378-52593107) | |
| 192-441, gnl|panTro1|chr8 (114271149-114271421) | |
| 192-441, gnl|rheMac2|chr9 (110304656-110304929) | |
| 192-441, gnl|rn3|chr1 (260073111-260073395) | |
| 192-441, gnl|tetNig1|chr18 (2396865-2397137) | |
| 192-441, gnl|xenTro1|scaffold_510 (193359-193103) | |
| 1100-1539, gnl|bosTau2|chr26 (19133943-19133508) | |
| 1100-1539, gnl|Hg17|chr10 (112353947-112354388) | |
| 1100-1539, gnl|Mm7|chr19 (53543718-53544122) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 192-441, gnl|bosTau2|chr26 (19136779-19136530) | |
| 192-441, gnl|canFam2|chr28 (24925648-24925931) | |
| 192-441, gnl|danRer3|chr22 (41038823-41039084) | |
| 192-441, gnl|dasNov1|scaffold_23584 (45392-45111) | |
| 192-441, gnl|echTel1|scaffold_207467 (385-632) | |
| 192-441, gnl|fr1|chrUn (226440450-226440187) | |
| 192-441, gnl|galGal2|chr6 (25074180-25074450) | |
| 192-441, gnl|hg17|chr10 (112351372-112351644) | |
| 192-441, gnl|Hg17|chr10 (112351383-112351632) | |
| 192-441, gnl|loxAfr1|scaffold_86752 (622-342) | |
| 192-441, gnl|mm7|chr19 (53539784-53540070) | |
| 192-441, gnl|Mm7|chr19 (53539799-53540048) | |
| 192-441, gnl|monDom2|scaffold_14 (52593378-52593107) | |
| 192-441, gnl|panTro1|chr8 (114271149-114271421) | |
| 192-441, gnl|rheMac2|chr9 (110304656-110304929) | |
| 192-441, gnl|rn3|chr1 (260073111-260073395) | |
| 192-441, gnl|tetNig1|chr18 (2396865-2397137) | |
| 192-441, gnl|xenTro1|scaffold_510 (193359-193103) | |
| 1100-1539, gnl|bosTau2|chr26 (19133943-19133508) | |
| 1100-1539, gnl|Hg17|chr10 (112353947-112354388) | |
| 1100-1539, gnl|Mm7|chr19 (53543718-53544122) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| sin (0.349895) | |
| nca (0.273748) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| bla (0.248694) | |
| spc (0.226732) | |
| tes (0.207814) | |
| hea (0.204499) | |
| aor (0.195274) | |
| fty (0.17584) | |
| rec (0.17307) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| fco (0.157208) | |
| fat (0.147427) | |
| lin (0.145603) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| thg (0.126791) | |
| ese (0.126502) | |
| clu (0.119646) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.349895) | |
| nca (0.273748) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| bla (0.248694) | |
| spc (0.226732) | |
| tes (0.207814) | |
| hea (0.204499) | |
| aor (0.195274) | |
| fty (0.17584) | |
| rec (0.17307) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| fco (0.157208) | |
| fat (0.147427) | |
| lin (0.145603) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| thg (0.126791) | |
| ese (0.126502) | |
| clu (0.119646) | |
| jca (0.11396) | |
| cty (0.10408) |