Ss1.1-rssp33_p1.5
|
GCGCTGCTGCCGCTTAAGGGAGGTTTTGTTCTGGAGGCCGAGTTTCTGGCCTGCGGTTTG
GATCTCGGAGTTTGGCTGGCCTCTCTTGCCGGTGGCCGCGACTCCACCCTAGTACCGCCC
CCGGTCGGCTCGATTCCCAGCCCGGCTCCAGGCGCCATGGCATCCCGCGGGAGGAAGCGG
AAGGCCGAGACGGCGCTGGGCGCGGCGGCCGAGAAGCAGGAGACGCCGGCTAGCGGCCGG
AAGGGAATGGAGGAGGCTAGCGTCGTTATTGAGCATTGCACGAGCTGACGCGTCTATGGG
CGCAACGCTGCGGCCCTGAGCCAGGCGCTGCGCCTGGAGGCCCCGGAGCTTCCAGTGAGG
GTGAATCCTACCAAGCCCCGGAGGGGCAGCTTCGAGGTGACGCTGATGCGCCCCGACGGT
AGCAGTGCGGAGCTCTGGACTGGAATTAAGAAGGGGCCCCCGCGCAAACTTAAGTTCCCT
GAGCCTCAAGAGGTGGTGGAGGAGCTGAAGAAGTACCTCTCGTAGGGTGGTTTGGGCAGA
GGTCCTCACGCCGAGCCTTCTGACCCTGGTGATGTTGGAGCATTTATGACGGGACATGGC
CAAACTTCAGTCATGTGCCTGAAGCTGTGGTTTCTTCCCCTCCAGAAATGATGGTTCAGT
CGTGAGGCATTCCTCTAGTAAGGCATTGAAAAGTTCTTGGATTTGGTTTAATAAAAATTA
AAATATTTTGGTTGAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCGCTGCTGCCGCTTAAGGGAGGTTTTGTTCTGGAGGCCGAGTTTCTGGCCTGCGGTTTG
GATCTCGGAGTTTGGCTGGCCTCTCTTGCCGGTGGCCGCGACTCCACCCTAGTACCGCCC
CCGGTCGGCTCGATTCCCAGCCCGGCTCCAGGCGCCATGGCATCCCGCGGGAGGAAGCGG
AAGGCCGAGACGGCGCTGGGCGCGGCGGCCGAGAAGCAGGAGACGCCGGCTAGCGGCCGG
AAGGGAATGGAGGAGGCTAGCGTCGTTATTGAGCATTGCACGAGCTGACGCGTCTATGGG
CGCAACGCTGCGGCCCTGAGCCAGGCGCTGCGCCTGGAGGCCCCGGAGCTTCCAGTGAGG
GTGAATCCTACCAAGCCCCGGAGGGGCAGCTTCGAGGTGACGCTGATGCGCCCCGACGGT
AGCAGTGCGGAGCTCTGGACTGGAATTAAGAAGGGGCCCCCGCGCAAACTTAAGTTCCCT
GAGCCTCAAGAGGTGGTGGAGGAGCTGAAGAAGTACCTCTCGTAGGGTGGTTTGGGCAGA
GGTCCTCACGCCGAGCCTTCTGACCCTGGTGATGTTGGAGCATTTATGACGGGACATGGC
CAAACTTCAGTCATGTGCCTGAAGCTGTGGTTTCTTCCCCTCCAGAAATGATGGTTCAGT
CGTGAGGCATTCCTCTAGTAAGGCATTGAAAAGTTCTTGGATTTGGTTTAATAAAAATTA
AAATATTTTGGTTGAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|33516960|sp|Q8IZQ5|SELH_HUMAN |
Protein identifier
|
gi|33516960|sp|Q8IZQ5|SELH_HUMAN |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
278-427, gnl|bosTau2|chr15 (50438106-50437957) |
|
278-427, gnl|canFam2|chr18 (41545510-41545369) |
|
278-427, gnl|dasNov1|scaffold_16172 (12108-12249) |
|
278-427, gnl|echTel1|scaffold_292965 (94064-93923) |
|
278-427, gnl|fr1|chrUn (235975781-235975912) |
|
278-427, gnl|hg17|chr11 (57265846-57265987) |
|
278-427, gnl|Hg17|chr11 (57265856-57266005) |
|
278-427, gnl|loxAfr1|scaffold_15132 (16951-16810) |
|
278-427, gnl|mm7|chr2 (84514116-84513978) |
|
278-427, gnl|Mm7|chr2 (84514107-84513958) |
|
278-427, gnl|monDom2|scaffold_33 (20851309-20851450) |
|
278-427, gnl|oryCun1|scaffold_211845 (39826-39685) |
|
278-427, gnl|panTro1|chr9 (58174848-58174989) |
|
278-427, gnl|rheMac2|chr14 (15670538-15670397) |
|
278-427, gnl|rn3|chr3 (67775275-67775137) |
|
278-427, gnl|tetNig1|chr1 (6963909-6964053) |
| |
|
554-741, gnl|bosTau2|chr15 (50437001-50436815) |
|
554-741, gnl|Hg17|chr11 (57266909-57267094) |
|
554-741, gnl|Mm7|chr2 (84513115-84512933) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
278-427, gnl|bosTau2|chr15 (50438106-50437957) |
|
278-427, gnl|canFam2|chr18 (41545510-41545369) |
|
278-427, gnl|dasNov1|scaffold_16172 (12108-12249) |
|
278-427, gnl|echTel1|scaffold_292965 (94064-93923) |
|
278-427, gnl|fr1|chrUn (235975781-235975912) |
|
278-427, gnl|hg17|chr11 (57265846-57265987) |
|
278-427, gnl|Hg17|chr11 (57265856-57266005) |
|
278-427, gnl|loxAfr1|scaffold_15132 (16951-16810) |
|
278-427, gnl|mm7|chr2 (84514116-84513978) |
|
278-427, gnl|Mm7|chr2 (84514107-84513958) |
|
278-427, gnl|monDom2|scaffold_33 (20851309-20851450) |
|
278-427, gnl|oryCun1|scaffold_211845 (39826-39685) |
|
278-427, gnl|panTro1|chr9 (58174848-58174989) |
|
278-427, gnl|rheMac2|chr14 (15670538-15670397) |
|
278-427, gnl|rn3|chr3 (67775275-67775137) |
|
278-427, gnl|tetNig1|chr1 (6963909-6964053) |
| |
|
554-741, gnl|bosTau2|chr15 (50437001-50436815) |
|
554-741, gnl|Hg17|chr11 (57266909-57267094) |
|
554-741, gnl|Mm7|chr2 (84513115-84512933) |
|
csp (0.483559) |
|
cag (0.453583) |
|
amn (0.417711) |
|
cje (0.330469) |
|
sme (0.305437) |
|
nca (0.273748) |
|
che (0.272628) |
|
ssp (0.271039) |
|
cly (0.241284) |
|
nms (0.213858) |
|
mas (0.210305) |
|
tes (0.207814) |
|
hea (0.204499) |
|
col (0.195008) |
|
nep (0.183925) |
|
gul (0.177588) |
|
fty (0.17584) |
|
ill (0.175593) |
|
nje (0.16592) |
|
nco (0.161734) |
|
cli (0.152812) |
|
eli (0.151814) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
csk (0.140746) |
|
ute (0.132784) |
|
cov (0.132153) |
|
sug (0.127291) |
|
eru (0.120048) |
|
ebs (0.118301) |
|
med (0.116252) |
|
ecc (0.115035) |
|
spc (0.113366) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
|
csp (0.483559) |
|
cag (0.453583) |
|
amn (0.417711) |
|
cje (0.330469) |
|
sme (0.305437) |
|
nca (0.273748) |
|
che (0.272628) |
|
ssp (0.271039) |
|
cly (0.241284) |
|
nms (0.213858) |
|
mas (0.210305) |
|
tes (0.207814) |
|
hea (0.204499) |
|
col (0.195008) |
|
nep (0.183925) |
|
gul (0.177588) |
|
fty (0.17584) |
|
ill (0.175593) |
|
nje (0.16592) |
|
nco (0.161734) |
|
cli (0.152812) |
|
eli (0.151814) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
csk (0.140746) |
|
ute (0.132784) |
|
cov (0.132153) |
|
sug (0.127291) |
|
eru (0.120048) |
|
ebs (0.118301) |
|
med (0.116252) |
|
ecc (0.115035) |
|
spc (0.113366) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
