Ss1.1-rssp34_j18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGCGAGCGGACTTCCCCGGGCGGCGGCGGCGGCCAGCACCTCGGTGAAGCCCATTTT CAGTCGGGACATGAACGAGGCCAAGCGGAGGGTGCGCGAGCTCTATCGCGCCTGGTATCG GGAGGTGCCGAACACTGTGCATTTATTCCAGCTAGACATCTCTGTGAAACAGGGACGAGA TAAAGTCCGAGAAATGTTTATGAAGAATGCCCACGTCACAGACCCCAGGGTGGTTGATCT TCTGGTCATTAAGGGAAAGATGGAGCTGGAGGAGACGATTAACGTGTGGAAGCAGCGGAC ACATATCATGCGGTTTTTCCATGAAACAGAAGCACCAAGGCCAACGGATTTCCTGTCCAA GTTCTACGTTGGCCACGACCCGTGAAGTCACTCAGTGGAAAGGTGCATGTTGCTATTTAA ATATTTTAGAGCACAAATAAACTCAGTATGTGATGGTCACTTCATGACAGAGTTCCATTG GTGAACCAATGGGAAGCTGTACTTCTGCAGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTG AACAAGTTGGGTCTGATATACACACCACCTGTTCTTCCCTTTTCCTGAAACGTGGTGTTT CCAATAAATTAGATTCTCTTTTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGCGAGCGGACTTCCCCGGGCGGCGGCGGCGGCCAGCACCTCGGTGAAGCCCATTTT CAGTCGGGACATGAACGAGGCCAAGCGGAGGGTGCGCGAGCTCTATCGCGCCTGGTATCG GGAGGTGCCGAACACTGTGCATTTATTCCAGCTAGACATCTCTGTGAAACAGGGACGAGA TAAAGTCCGAGAAATGTTTATGAAGAATGCCCACGTCACAGACCCCAGGGTGGTTGATCT TCTGGTCATTAAGGGAAAGATGGAGCTGGAGGAGACGATTAACGTGTGGAAGCAGCGGAC ACATATCATGCGGTTTTTCCATGAAACAGAAGCACCAAGGCCAACGGATTTCCTGTCCAA GTTCTACGTTGGCCACGACCCGTGAAGTCACTCAGTGGAAAGGTGCATGTTGCTATTTAA ATATTTTAGAGCACAAATAAACTCAGTATGTGATGGTCACTTCATGACAGAGTTCCATTG GTGAACCAATGGGAAGCTGTACTTCTGCAGTCTCTCTCTCTCTCTCTCTCTCTCTGTCTG AACAAGTTGGGTCTGATATACACACCACCTGTTCTTCCCTTTTCCTGAAACGTGGTGTTT CCAATAAATTAGATTCTCTTTTCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-137, gnl|bosTau2|chr5 (68528791-68528655) | |
| 1-137, gnl|canFam2|chr10 (26347976-26347873) | |
| 1-137, gnl|danRer3|chrNA (126788191-126788284) | |
| 1-137, gnl|dasNov1|scaffold_274405 (686-789) | |
| 1-137, gnl|echTel1|scaffold_43245 (1853-1755) | |
| 1-137, gnl|fr1|chrUn (78565645-78565745) | |
| 1-137, gnl|galGal2|chr1 (46141479-46141377) | |
| 1-137, gnl|hg17|chr22 (40811106-40811209) | |
| 1-137, gnl|Hg17|chr22 (40811246-40811110) | |
| 1-137, gnl|loxAfr1|scaffold_203771 (775-672) | |
| 1-137, gnl|mm7|chr15 (82438472-82438575) | |
| 1-137, gnl|Mm7|chr15 (82438621-82438476) | |
| 1-137, gnl|monDom2|scaffold_119 (3426969-3426866) | |
| 1-137, gnl|oryCun1|scaffold_176685 (82589-82677) | |
| 1-137, gnl|panTro1|chr23_random (12793183-12793286) | |
| 1-137, gnl|rheMac2|chr10 (86063091-86063194) | |
| 1-137, gnl|rn3|chr7 (120763992-120764095) | |
| 1-137, gnl|tetNig1|chrUn_random (38385124-38385032) | |
| 1-137, gnl|xenTro1|scaffold_156 (453500-453397) | |
| 252-624, gnl|bosTau2|chr5 (68518014-68517655) | |
| 252-624, gnl|Hg17|chr22 (40806820-40806474) | |
| 252-624, gnl|Mm7|chr15 (82434768-82434428) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-137, gnl|bosTau2|chr5 (68528791-68528655) | |
| 1-137, gnl|canFam2|chr10 (26347976-26347873) | |
| 1-137, gnl|danRer3|chrNA (126788191-126788284) | |
| 1-137, gnl|dasNov1|scaffold_274405 (686-789) | |
| 1-137, gnl|echTel1|scaffold_43245 (1853-1755) | |
| 1-137, gnl|fr1|chrUn (78565645-78565745) | |
| 1-137, gnl|galGal2|chr1 (46141479-46141377) | |
| 1-137, gnl|hg17|chr22 (40811106-40811209) | |
| 1-137, gnl|Hg17|chr22 (40811246-40811110) | |
| 1-137, gnl|loxAfr1|scaffold_203771 (775-672) | |
| 1-137, gnl|mm7|chr15 (82438472-82438575) | |
| 1-137, gnl|Mm7|chr15 (82438621-82438476) | |
| 1-137, gnl|monDom2|scaffold_119 (3426969-3426866) | |
| 1-137, gnl|oryCun1|scaffold_176685 (82589-82677) | |
| 1-137, gnl|panTro1|chr23_random (12793183-12793286) | |
| 1-137, gnl|rheMac2|chr10 (86063091-86063194) | |
| 1-137, gnl|rn3|chr7 (120763992-120764095) | |
| 1-137, gnl|tetNig1|chrUn_random (38385124-38385032) | |
| 1-137, gnl|xenTro1|scaffold_156 (453500-453397) | |
| 252-624, gnl|bosTau2|chr5 (68518014-68517655) | |
| 252-624, gnl|Hg17|chr22 (40806820-40806474) | |
| 252-624, gnl|Mm7|chr15 (82434768-82434428) |
| Expressed library(ies): 50 entry(ies) | More info |
| Expressed library(ies): 50 entry(ies) | Help | Less info |
| amn (0.835422) | |
| nms (0.641574) | |
| sme (0.610874) | |
| fce (0.543183) | |
| ssp (0.542079) | |
| ebs (0.473205) | |
| bfe (0.449573) | |
| hlv (0.417769) | |
| hea (0.408998) | |
| col (0.390016) | |
| nep (0.36785) | |
| gul (0.355177) | |
| ton (0.351) | |
| fbs (0.350693) | |
| vin (0.332557) | |
| cje (0.330469) | |
| cli (0.305623) | |
| isp (0.300752) | |
| lnt (0.284616) | |
| cst (0.280073) | |
| cga (0.279096) | |
| nca (0.273748) | |
| ute (0.265569) | |
| ova (0.258264) | |
| thg (0.253582) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| med (0.232504) | |
| ece (0.229305) | |
| spc (0.226732) | |
| mas (0.210305) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| sin (0.174948) | |
| rec (0.17307) | |
| cut (0.169924) | |
| cki (0.165235) | |
| csp (0.161186) | |
| fco (0.157208) | |
| eli (0.151814) | |
| cag (0.151194) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| che (0.136314) | |
| pla (0.133672) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jej (0.0989218) |
| Expressed library(ies): 50 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.835422) | |
| nms (0.641574) | |
| sme (0.610874) | |
| fce (0.543183) | |
| ssp (0.542079) | |
| ebs (0.473205) | |
| bfe (0.449573) | |
| hlv (0.417769) | |
| hea (0.408998) | |
| col (0.390016) | |
| nep (0.36785) | |
| gul (0.355177) | |
| ton (0.351) | |
| fbs (0.350693) | |
| vin (0.332557) | |
| cje (0.330469) | |
| cli (0.305623) | |
| isp (0.300752) | |
| lnt (0.284616) | |
| cst (0.280073) | |
| cga (0.279096) | |
| nca (0.273748) | |
| ute (0.265569) | |
| ova (0.258264) | |
| thg (0.253582) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| med (0.232504) | |
| ece (0.229305) | |
| spc (0.226732) | |
| mas (0.210305) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| sin (0.174948) | |
| rec (0.17307) | |
| cut (0.169924) | |
| cki (0.165235) | |
| csp (0.161186) | |
| fco (0.157208) | |
| eli (0.151814) | |
| cag (0.151194) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| che (0.136314) | |
| pla (0.133672) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jej (0.0989218) |