Ss1.1-rssp35_o1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTCATGGTGCCCCAGATCCTTTATTAAGGTCTCTCGTTTGACCCAAATA CATTAACAAGAGATTGCTGAGCTGCAGCCCCAAACACAGTACCCTCCCATCCTCCTGGCC AGGGAGAGGACAGTCAGAAAGATAGAGGATTTGAGAGAGTGGGGTAAGCATGTGCTCAGG TGGAGGGAGCGAGCGGAAGAGAGATGAGGGCCCTTAGATGCGGCAAGAGGGAATCGCAAG AAAGCGCATGTGGGGGGCGGTGGAAGAAACAAAAAATGGATACAGGGATATCGTGGGACA GGAAACACAAGTCAGAGAGCTGGGCCGGTGTGTAGGGAAAGGTAGCTCCTTGGATCTCAG CACCCAACATAGAGACTTCAAGGGCCCCAAGCCAGAGGATGACCTGGTGTCCCTGGAGGC GCTCAAGGAAGGACAGGGAGGGCAGGAGGGAGCATGAGGAGGGCAGGTGGGGCTGGGCGA TGGCTGCCCAGCACCTAGTCGTCGTCGTCATCATCGTCATCGTCATCTTCGTCATCATCC TCTGTGTTGATCTCACCGGACAGCACATCCTCCAGCCAGTCTTCCAGCTCCTCAGCAGAA GGCAGGTCCTCTTCGTCATCCATCTCCATCCATATGCTGTCCGCATCAGTGACGTTGACG ACTCCTATTTGTGGGGCCGATAGGTCGATGTCGAATGTCTTCTCCCAGTAGGGAACCAGC AGGGGGAAGTCATCAGGATCAATCCAGATGATGCTGAGATCAGGGTTATCAGTGTTATCT TGGGCCACAGACTTGAGAGTCTCTAAGAATTCATAGCCGTCAGGATCAGCTTCTTCTGCA AAGGCCACAATATGAATTCCGTCCATATCATCCTCCCAGGTCTCATACATACTCTCAGGC TTCAGTTTCCTCAGGGTTGATCTCCTGTGCTTCTCCACGAAGTGGACAATCTCCTCTTCG CTGTTGGGCTTGTCTGGGATGGTCACAGGCTCTTCCATGAAGGCCTCGTAGAAATCAATC TCGTTCAGCTTCAGGGTCAGCTTCTTTGCCACCTTGCTGTCGAAGGTGGCGAAGAAGGGG ATGTAGGGGTGAAACTCCTCTGCTGCATCCTCGAAGGCTTTGTAATGCTCTGAGTCTTTG TTCTTGAAGTAGCCAATGAGTTTGATCTCATCTTCAATATTCTCGAATGCCTGCAGCTCT CGTTCCCCCTCAATCAGTTCCACAGGGTCCTCTAGGACATCAAGCAGAAACTCCACCAGG GTGTCAGCAGAAAACTCGCCATCATACTCAATGACTTCATCTCCTTTGAATACATAAATG CTGTCCTCTTCAGTTAGCCCTAGTTTCTTGGCTACGGCCGCGTCCTTCTCAGAGTCCACC ATCCCGAAGCCAACACCCTTGTCTTCTAGAACTTGGGCTGCTAACTCCAGGATCAGCTCC TCCAACTCAAACTGTTTTTGTGAGGCCTTGTCGTCCTCGGGGGGTTCATGGTAGAGCAGT GCCAGCACCTCATACTTCTTGAACACATTCTTGTAGTTCTTTGCGTTGACGTTGACCACA CGGTCCACACCATCATACTGGGGGAAGTCCAGCCCTTCCTCCCCGTGCACCCCTGACTTG GGTGTCCCTAGCACCAGCAGTAACAGCAGTGCCAGCCGCAGGCCGGGCACAGCTCTGGCC CCCATCCTGTCTGCAGCGCTCATGGAGGTAGAGGGGTCTGGGTCGGCTCTCCTGGTCCAG AAGAGGTTAGCTGGGGGAGGGAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTCATGGTGCCCCAGATCCTTTATTAAGGTCTCTCGTTTGACCCAAATA CATTAACAAGAGATTGCTGAGCTGCAGCCCCAAACACAGTACCCTCCCATCCTCCTGGCC AGGGAGAGGACAGTCAGAAAGATAGAGGATTTGAGAGAGTGGGGTAAGCATGTGCTCAGG TGGAGGGAGCGAGCGGAAGAGAGATGAGGGCCCTTAGATGCGGCAAGAGGGAATCGCAAG AAAGCGCATGTGGGGGGCGGTGGAAGAAACAAAAAATGGATACAGGGATATCGTGGGACA GGAAACACAAGTCAGAGAGCTGGGCCGGTGTGTAGGGAAAGGTAGCTCCTTGGATCTCAG CACCCAACATAGAGACTTCAAGGGCCCCAAGCCAGAGGATGACCTGGTGTCCCTGGAGGC GCTCAAGGAAGGACAGGGAGGGCAGGAGGGAGCATGAGGAGGGCAGGTGGGGCTGGGCGA TGGCTGCCCAGCACCTAGTCGTCGTCGTCATCATCGTCATCGTCATCTTCGTCATCATCC TCTGTGTTGATCTCACCGGACAGCACATCCTCCAGCCAGTCTTCCAGCTCCTCAGCAGAA GGCAGGTCCTCTTCGTCATCCATCTCCATCCATATGCTGTCCGCATCAGTGACGTTGACG ACTCCTATTTGTGGGGCCGATAGGTCGATGTCGAATGTCTTCTCCCAGTAGGGAACCAGC AGGGGGAAGTCATCAGGATCAATCCAGATGATGCTGAGATCAGGGTTATCAGTGTTATCT TGGGCCACAGACTTGAGAGTCTCTAAGAATTCATAGCCGTCAGGATCAGCTTCTTCTGCA AAGGCCACAATATGAATTCCGTCCATATCATCCTCCCAGGTCTCATACATACTCTCAGGC TTCAGTTTCCTCAGGGTTGATCTCCTGTGCTTCTCCACGAAGTGGACAATCTCCTCTTCG CTGTTGGGCTTGTCTGGGATGGTCACAGGCTCTTCCATGAAGGCCTCGTAGAAATCAATC TCGTTCAGCTTCAGGGTCAGCTTCTTTGCCACCTTGCTGTCGAAGGTGGCGAAGAAGGGG ATGTAGGGGTGAAACTCCTCTGCTGCATCCTCGAAGGCTTTGTAATGCTCTGAGTCTTTG TTCTTGAAGTAGCCAATGAGTTTGATCTCATCTTCAATATTCTCGAATGCCTGCAGCTCT CGTTCCCCCTCAATCAGTTCCACAGGGTCCTCTAGGACATCAAGCAGAAACTCCACCAGG GTGTCAGCAGAAAACTCGCCATCATACTCAATGACTTCATCTCCTTTGAATACATAAATG CTGTCCTCTTCAGTTAGCCCTAGTTTCTTGGCTACGGCCGCGTCCTTCTCAGAGTCCACC ATCCCGAAGCCAACACCCTTGTCTTCTAGAACTTGGGCTGCTAACTCCAGGATCAGCTCC TCCAACTCAAACTGTTTTTGTGAGGCCTTGTCGTCCTCGGGGGGTTCATGGTAGAGCAGT GCCAGCACCTCATACTTCTTGAACACATTCTTGTAGTTCTTTGCGTTGACGTTGACCACA CGGTCCACACCATCATACTGGGGGAAGTCCAGCCCTTCCTCCCCGTGCACCCCTGACTTG GGTGTCCCTAGCACCAGCAGTAACAGCAGTGCCAGCCGCAGGCCGGGCACAGCTCTGGCC CCCATCCTGTCTGCAGCGCTCATGGAGGTAGAGGGGTCTGGGTCGGCTCTCCTGGTCCAG AAGAGGTTAGCTGGGGGAGGGAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 381-492, - strand, RNAz p=0.941765 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 381-492, - strand, RNAz p=0.941765 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC022289, - |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 15-644, gnl|bosTau2|chr3 (4839565-4840137) | |
| 15-644, gnl|Hg17|chr1 (156984746-156984108) | |
| 15-644, gnl|Mm7|chr1 (172180069-172180676) | |
| 720-821, gnl|bosTau2|chr3 (4842200-4842301) | |
| 720-821, gnl|canFam2|chr38 (25013971-25013852) | |
| 720-821, gnl|danRer3|chr3 (5459341-5459456) | |
| 720-821, gnl|dasNov1|scaffold_97311 (4470-4351) | |
| 720-821, gnl|echTel1|scaffold_319549 (39806-39925) | |
| 720-821, gnl|fr1|chrUn (114868224-114868107) | |
| 720-821, gnl|hg17|chr1 (156981804-156981923) | |
| 720-821, gnl|Hg17|chr1 (156981916-156981815) | |
| 720-821, gnl|loxAfr1|scaffold_80147 (4732-4613) | |
| 720-821, gnl|mm7|chr1 (172183315-172183196) | |
| 720-821, gnl|Mm7|chr1 (172183201-172183302) | |
| 720-821, gnl|monDom2|scaffold_13 (61333545-61333426) | |
| 720-821, gnl|oryCun1|scaffold_200110 (3311-3192) | |
| 720-821, gnl|panTro1|chr1 (139059975-139060094) | |
| 720-821, gnl|rheMac2|chr1 (138820787-138820906) | |
| 720-821, gnl|rn3|chr13 (88392472-88392353) | |
| 720-821, gnl|tetNig1|chr15 (2212773-2212657) | |
| 720-821, gnl|xenTro1|scaffold_96 (1271013-1270905) | |
| 922-1089, gnl|bosTau2|chr3 (4844315-4844480) | |
| 922-1089, gnl|Hg17|chr1 (156978890-156978723) | |
| 922-1089, gnl|Mm7|chr1 (172185185-172185350) | |
| 1127-1238, gnl|bosTau2|chr3 (4845209-4845320) | |
| 1127-1238, gnl|canFam2|chr38 (25016495-25016371) | |
| 1127-1238, gnl|danRer3|chr3 (5454697-5454821) | |
| 1127-1238, gnl|dasNov1|scaffold_5457 (5975-6098) | |
| 1127-1238, gnl|echTel1|scaffold_319549 (36717-36841) | |
| 1127-1238, gnl|fr1|chrUn (114869431-114869306) | |
| 1127-1238, gnl|hg17|chr1 (156977870-156977994) | |
| 1127-1238, gnl|Hg17|chr1 (156977986-156977875) | |
| 1127-1238, gnl|loxAfr1|scaffold_80147 (7929-7805) | |
| 1127-1238, gnl|mm7|chr1 (172186200-172186076) | |
| 1127-1238, gnl|Mm7|chr1 (172186082-172186193) | |
| 1127-1238, gnl|monDom2|scaffold_13 (61336934-61336810) | |
| 1127-1238, gnl|oryCun1|scaffold_200110 (6199-6075) | |
| 1127-1238, gnl|panTro1|chr1 (139056010-139056134) | |
| 1127-1238, gnl|rheMac2|chr1 (138817260-138817384) | |
| 1127-1238, gnl|rn3|chr13 (88395338-88395214) | |
| 1127-1238, gnl|tetNig1|chr15 (2213628-2213506) | |
| 1425-1764, gnl|bosTau2|chr3 (4848695-4849034) | |
| 1425-1764, gnl|Hg17|chr1 (156973893-156973554) | |
| 1425-1764, gnl|Mm7|chr1 (172189585-172189924) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 15-644, gnl|bosTau2|chr3 (4839565-4840137) | |
| 15-644, gnl|Hg17|chr1 (156984746-156984108) | |
| 15-644, gnl|Mm7|chr1 (172180069-172180676) | |
| 720-821, gnl|bosTau2|chr3 (4842200-4842301) | |
| 720-821, gnl|canFam2|chr38 (25013971-25013852) | |
| 720-821, gnl|danRer3|chr3 (5459341-5459456) | |
| 720-821, gnl|dasNov1|scaffold_97311 (4470-4351) | |
| 720-821, gnl|echTel1|scaffold_319549 (39806-39925) | |
| 720-821, gnl|fr1|chrUn (114868224-114868107) | |
| 720-821, gnl|hg17|chr1 (156981804-156981923) | |
| 720-821, gnl|Hg17|chr1 (156981916-156981815) | |
| 720-821, gnl|loxAfr1|scaffold_80147 (4732-4613) | |
| 720-821, gnl|mm7|chr1 (172183315-172183196) | |
| 720-821, gnl|Mm7|chr1 (172183201-172183302) | |
| 720-821, gnl|monDom2|scaffold_13 (61333545-61333426) | |
| 720-821, gnl|oryCun1|scaffold_200110 (3311-3192) | |
| 720-821, gnl|panTro1|chr1 (139059975-139060094) | |
| 720-821, gnl|rheMac2|chr1 (138820787-138820906) | |
| 720-821, gnl|rn3|chr13 (88392472-88392353) | |
| 720-821, gnl|tetNig1|chr15 (2212773-2212657) | |
| 720-821, gnl|xenTro1|scaffold_96 (1271013-1270905) | |
| 922-1089, gnl|bosTau2|chr3 (4844315-4844480) | |
| 922-1089, gnl|Hg17|chr1 (156978890-156978723) | |
| 922-1089, gnl|Mm7|chr1 (172185185-172185350) | |
| 1127-1238, gnl|bosTau2|chr3 (4845209-4845320) | |
| 1127-1238, gnl|canFam2|chr38 (25016495-25016371) | |
| 1127-1238, gnl|danRer3|chr3 (5454697-5454821) | |
| 1127-1238, gnl|dasNov1|scaffold_5457 (5975-6098) | |
| 1127-1238, gnl|echTel1|scaffold_319549 (36717-36841) | |
| 1127-1238, gnl|fr1|chrUn (114869431-114869306) | |
| 1127-1238, gnl|hg17|chr1 (156977870-156977994) | |
| 1127-1238, gnl|Hg17|chr1 (156977986-156977875) | |
| 1127-1238, gnl|loxAfr1|scaffold_80147 (7929-7805) | |
| 1127-1238, gnl|mm7|chr1 (172186200-172186076) | |
| 1127-1238, gnl|Mm7|chr1 (172186082-172186193) | |
| 1127-1238, gnl|monDom2|scaffold_13 (61336934-61336810) | |
| 1127-1238, gnl|oryCun1|scaffold_200110 (6199-6075) | |
| 1127-1238, gnl|panTro1|chr1 (139056010-139056134) | |
| 1127-1238, gnl|rheMac2|chr1 (138817260-138817384) | |
| 1127-1238, gnl|rn3|chr13 (88395338-88395214) | |
| 1127-1238, gnl|tetNig1|chr15 (2213628-2213506) | |
| 1425-1764, gnl|bosTau2|chr3 (4848695-4849034) | |
| 1425-1764, gnl|Hg17|chr1 (156973893-156973554) | |
| 1425-1764, gnl|Mm7|chr1 (172189585-172189924) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| mas (2.31335) | |
| nms (2.13858) | |
| tbr (0.616713) | |
| ton (0.526501) | |
| bfe (0.449573) | |
| ssp (0.406559) | |
| nep (0.36785) | |
| sme (0.305437) | |
| ldo (0.291008) | |
| eye (0.170503) | |
| ste (0.135208) | |
| ese (0.126502) | |
| med (0.116252) | |
| jca (0.11396) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (2.31335) | |
| nms (2.13858) | |
| tbr (0.616713) | |
| ton (0.526501) | |
| bfe (0.449573) | |
| ssp (0.406559) | |
| nep (0.36785) | |
| sme (0.305437) | |
| ldo (0.291008) | |
| eye (0.170503) | |
| ste (0.135208) | |
| ese (0.126502) | |
| med (0.116252) | |
| jca (0.11396) |