Ss1.1-rste02_d12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAGCACTACTTGAAGTCCCCTCCCTCCATCCATTCCCCTACGTCTGGGCAGGACTTCACT TTCGGAGCCTTCGGTGTCGCCATCTTTCCTGCTATAGACTGTAGCATTCCCTTGGACAAT GCTGCTGTTTTTCATCTGCCATCCATTGGGTTCTTAGTCATAATCTAATAAATAAAAATG AAAAGGGAGTTGCATTAAAAAATGGATTCTGTTGGCAAAAGTATTCTTTTCAGTAAACTT TTCATTGGGGACCTGTCACCAATATTTACCTACTCCATGTGTTTTGTATCTGAATTGCTT GTATCCTTTTTTTTCCCCTTATGTTGAAGTAACAAGATCAACTCATTCTGGTACGGTGAT AGTTTTGCTGTGGCAAAAGCATAGGAGTGGTCGTCACCTGTGTCCTTTAGAAGGGTTGGG AGTGGGCCCAGCACCCCTGGGTTAAATGGAATGGACTGAACTGGGAACTCAAGCAGTAGG GCTGTACTGCTGGTTTCCTAGGCACAGCTCTGTTGAAAGAAGGAATGTAAGTCCTTAGCA GCATTCTAATTTAAACTGGTGACACTGATGTCAAAATTTGCCACTCGGATCCATATAAGG TATATAACTGTATTTGAAATGTGTTTTTGCGTGTGTGTGTGTAGAATGGGTAAATAAAAT TGTTGAGTAACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAGCACTACTTGAAGTCCCCTCCCTCCATCCATTCCCCTACGTCTGGGCAGGACTTCACT TTCGGAGCCTTCGGTGTCGCCATCTTTCCTGCTATAGACTGTAGCATTCCCTTGGACAAT GCTGCTGTTTTTCATCTGCCATCCATTGGGTTCTTAGTCATAATCTAATAAATAAAAATG AAAAGGGAGTTGCATTAAAAAATGGATTCTGTTGGCAAAAGTATTCTTTTCAGTAAACTT TTCATTGGGGACCTGTCACCAATATTTACCTACTCCATGTGTTTTGTATCTGAATTGCTT GTATCCTTTTTTTTCCCCTTATGTTGAAGTAACAAGATCAACTCATTCTGGTACGGTGAT AGTTTTGCTGTGGCAAAAGCATAGGAGTGGTCGTCACCTGTGTCCTTTAGAAGGGTTGGG AGTGGGCCCAGCACCCCTGGGTTAAATGGAATGGACTGAACTGGGAACTCAAGCAGTAGG GCTGTACTGCTGGTTTCCTAGGCACAGCTCTGTTGAAAGAAGGAATGTAAGTCCTTAGCA GCATTCTAATTTAAACTGGTGACACTGATGTCAAAATTTGCCACTCGGATCCATATAAGG TATATAACTGTATTTGAAATGTGTTTTTGCGTGTGTGTGTGTAGAATGGGTAAATAAAAT TGTTGAGTAACT |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 28-191, gnl|bosTau2|chr16 (3782189-3782026) | |
| 28-191, gnl|canFam2|chr7 (9171023-9171691) | |
| 28-191, gnl|dasNov1|scaffold_16622 (8793-8120) | |
| 28-191, gnl|echTel1|scaffold_298353 (2853-3587) | |
| 28-191, gnl|hg17|chr1 (203638625-203639310) | |
| 28-191, gnl|Hg17|chr1 (203638883-203639059) | |
| 28-191, gnl|loxAfr1|scaffold_8132 (85907-85197) | |
| 28-191, gnl|mm7|chr1 (130597206-130596585) | |
| 28-191, gnl|Mm7|chr1 (130596967-130596801) | |
| 28-191, gnl|monDom2|scaffold_13 (9442810-9443519) | |
| 28-191, gnl|panTro1|chr1 (187220765-187221450) | |
| 28-191, gnl|rn3|chr13 (43643422-43642852) | |
| 212-444, gnl|bosTau2|chr16 (3782025-3781802) | |
| 212-444, gnl|canFam2|chr7 (9171023-9171691) | |
| 212-444, gnl|dasNov1|scaffold_16622 (8793-8120) | |
| 212-444, gnl|echTel1|scaffold_298353 (2853-3587) | |
| 212-444, gnl|hg17|chr1 (203638625-203639310) | |
| 212-444, gnl|Hg17|chr1 (203639086-203639318) | |
| 212-444, gnl|loxAfr1|scaffold_8132 (85907-85197) | |
| 212-444, gnl|mm7|chr1 (130597206-130596585) | |
| 212-444, gnl|Mm7|chr1 (130596800-130596575) | |
| 212-444, gnl|monDom2|scaffold_13 (9442810-9443519) | |
| 212-444, gnl|panTro1|chr1 (187220765-187221450) | |
| 212-444, gnl|rn3|chr13 (43643422-43642852) | |
| 448-672, gnl|bosTau2|chr16 (3781777-3781546) | |
| 448-672, gnl|canFam2|chr7 (9171692-9172183) | |
| 448-672, gnl|dasNov1|scaffold_16622 (8119-7624) | |
| 448-672, gnl|echTel1|scaffold_298353 (3588-4022) | |
| 448-672, gnl|hg17|chr1 (203639311-203639796) | |
| 448-672, gnl|Hg17|chr1 (203639324-203639549) | |
| 448-672, gnl|loxAfr1|scaffold_8132 (85196-84687) | |
| 448-672, gnl|mm7|chr1 (130596584-130596086) | |
| 448-672, gnl|Mm7|chr1 (130596569-130596345) | |
| 448-672, gnl|monDom2|scaffold_13 (9443520-9444004) | |
| 448-672, gnl|oryCun1|scaffold_210184 (336777-337247) | |
| 448-672, gnl|panTro1|chr1 (187221451-187221936) | |
| 448-672, gnl|rn3|chr13 (43642851-43642374) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 28-191, gnl|bosTau2|chr16 (3782189-3782026) | |
| 28-191, gnl|canFam2|chr7 (9171023-9171691) | |
| 28-191, gnl|dasNov1|scaffold_16622 (8793-8120) | |
| 28-191, gnl|echTel1|scaffold_298353 (2853-3587) | |
| 28-191, gnl|hg17|chr1 (203638625-203639310) | |
| 28-191, gnl|Hg17|chr1 (203638883-203639059) | |
| 28-191, gnl|loxAfr1|scaffold_8132 (85907-85197) | |
| 28-191, gnl|mm7|chr1 (130597206-130596585) | |
| 28-191, gnl|Mm7|chr1 (130596967-130596801) | |
| 28-191, gnl|monDom2|scaffold_13 (9442810-9443519) | |
| 28-191, gnl|panTro1|chr1 (187220765-187221450) | |
| 28-191, gnl|rn3|chr13 (43643422-43642852) | |
| 212-444, gnl|bosTau2|chr16 (3782025-3781802) | |
| 212-444, gnl|canFam2|chr7 (9171023-9171691) | |
| 212-444, gnl|dasNov1|scaffold_16622 (8793-8120) | |
| 212-444, gnl|echTel1|scaffold_298353 (2853-3587) | |
| 212-444, gnl|hg17|chr1 (203638625-203639310) | |
| 212-444, gnl|Hg17|chr1 (203639086-203639318) | |
| 212-444, gnl|loxAfr1|scaffold_8132 (85907-85197) | |
| 212-444, gnl|mm7|chr1 (130597206-130596585) | |
| 212-444, gnl|Mm7|chr1 (130596800-130596575) | |
| 212-444, gnl|monDom2|scaffold_13 (9442810-9443519) | |
| 212-444, gnl|panTro1|chr1 (187220765-187221450) | |
| 212-444, gnl|rn3|chr13 (43643422-43642852) | |
| 448-672, gnl|bosTau2|chr16 (3781777-3781546) | |
| 448-672, gnl|canFam2|chr7 (9171692-9172183) | |
| 448-672, gnl|dasNov1|scaffold_16622 (8119-7624) | |
| 448-672, gnl|echTel1|scaffold_298353 (3588-4022) | |
| 448-672, gnl|hg17|chr1 (203639311-203639796) | |
| 448-672, gnl|Hg17|chr1 (203639324-203639549) | |
| 448-672, gnl|loxAfr1|scaffold_8132 (85196-84687) | |
| 448-672, gnl|mm7|chr1 (130596584-130596086) | |
| 448-672, gnl|Mm7|chr1 (130596569-130596345) | |
| 448-672, gnl|monDom2|scaffold_13 (9443520-9444004) | |
| 448-672, gnl|oryCun1|scaffold_210184 (336777-337247) | |
| 448-672, gnl|panTro1|chr1 (187221451-187221936) | |
| 448-672, gnl|rn3|chr13 (43642851-43642374) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| cmu (0.186393) | |
| ill (0.175593) | |
| rec (0.17307) | |
| cje (0.165235) | |
| cst (0.140036) | |
| ste (0.135208) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (0.186393) | |
| ill (0.175593) | |
| rec (0.17307) | |
| cje (0.165235) | |
| cst (0.140036) | |
| ste (0.135208) |