Non-Coding RNA Search

Ss1.1-rste02_h20.5

Sequence:


               
               CTCCTTGGACAGCCTGCAGGCCACAGCAGGCAGCTAGACGCAGCAGAAAGAGAACTCCAC
CTGGCGAAGACACCTCTGCCTCCACAGCTGATGGGAGCCAGAGGTCACGAAGCGTTGGAG
GCCTGGCTTAAAGCCACCAGCCAGGCCAAGATGAAACATCTGCTCAAGTCTCCCCAGGCA
CCTGGCTGGGAGCGAGTGGGAGGAAGGAATGGAGAAAACTGATGCTAAACCACAAATTAG
CACCCTGGGCCTTGGCCCTGAAATGGCCTCTGCTGGCGTTGGAGGGGGTGAGACGAAAGT
AAATAAATAAAAGCGACACTGGGTGATAGGCCCTGTGGAAGTACCCGATGTCAGGCTTGA
GCAGAGATGAGCCAGGGCGTGATGGCTTAAAAAATCCTGGTCTGGGCCCGATGGCATCAA
AAGGCAAACTGCCCAAGGGGGTGTGGGGGAGGGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCTTGGACAGCCTGCAGGCCACAGCAGGCAGCTAGACGCAGCAGAAAGAGAACTCCAC
CTGGCGAAGACACCTCTGCCTCCACAGCTGATGGGAGCCAGAGGTCACGAAGCGTTGGAG
GCCTGGCTTAAAGCCACCAGCCAGGCCAAGATGAAACATCTGCTCAAGTCTCCCCAGGCA
CCTGGCTGGGAGCGAGTGGGAGGAAGGAATGGAGAAAACTGATGCTAAACCACAAATTAG
CACCCTGGGCCTTGGCCCTGAAATGGCCTCTGCTGGCGTTGGAGGGGGTGAGACGAAAGT
AAATAAATAAAAGCGACACTGGGTGATAGGCCCTGTGGAAGTACCCGATGTCAGGCTTGA
GCAGAGATGAGCCAGGGCGTGATGGCTTAAAAAATCCTGGTCTGGGCCCGATGGCATCAA
AAGGCAAACTGCCCAAGGGGGTGTGGGGGAGGGGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               47-339, + strand, RNAz p=0.976791

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               47-339, + strand, RNAz p=0.976791

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               81-203, + strand, RNAmicro p=0.953199
               

               
               44-150, - strand, RNAmicro p=0.927407

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               81-203, + strand, RNAmicro p=0.953199
               

               
               44-150, - strand, RNAmicro p=0.927407

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-455, gnl|bosTau2|chr18 (22863160-22862692)
               

               
               7-455, gnl|Hg17|chr16 (56612838-56612373)
               

               
               7-455, gnl|Mm7|chr8 (93936691-93936262)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-455, gnl|bosTau2|chr18 (22863160-22862692)
               

               
               7-455, gnl|Hg17|chr16 (56612838-56612373)
               

               
               7-455, gnl|Mm7|chr8 (93936691-93936262)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               elu (0.385356)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

	81-203, + strand, RNAmicro p=0.953199
	44-150, - strand, RNAmicro p=0.927407

	7-455, gnl\|bosTau2\|chr18 (22863160-22862692)
	7-455, gnl\|Hg17\|chr16 (56612838-56612373)
	7-455, gnl\|Mm7\|chr8 (93936691-93936262)