Ss1.1-rste02_p20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTCTGGAAGGACCTTAGACTTTCCTTGCAGGCTGTCTGTTAAGTTGGAAAGGACACTTG ACAAGCCTCATGACCCAAATGCAAACAAGCAAAACCTCCACAAGTACAGCACACTGGAGC AGCAAAAAGGAGCAACTTCTTTTTTGAAGAGTGTGATTTGCCAGCTAAGTGGCTTGGTGC AACAAACCATTCCTGACTCTGGCCTGGCTTTTTGGAATGGATCACCATCAGGAAAGAAAC CTGGAATAATCTGTCACACGAGGTATTTATTACAGTCAAGGGAAATGCTACGGACTCTGG CAGAAAGCCTGCTGAGCAGATAAGAAGAATCTGATCTCATCTGGAGAAAAGGAAGAGCGT AAAGAAGATTTAAGGTCTGGCCTGGCCAGAGGGAGGAGAGAGAGCAGGAAGATGCAACAG AAAAAGGAAGGCCCTGACAGGAGGGGCCCCGTGTATCCTCACTTTGCAGCCTTATTTGGT TAGAAGCCATTTTCTTTTTCAGCTTCACTTCCCCCAGGAGGGGCGGTGTGTGAACTACGG CTGCCACCTGTTTGGGTAATAAAATGTTCCTGGGACCCATCGCACTTCTTCACATACTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTCTGGAAGGACCTTAGACTTTCCTTGCAGGCTGTCTGTTAAGTTGGAAAGGACACTTG ACAAGCCTCATGACCCAAATGCAAACAAGCAAAACCTCCACAAGTACAGCACACTGGAGC AGCAAAAAGGAGCAACTTCTTTTTTGAAGAGTGTGATTTGCCAGCTAAGTGGCTTGGTGC AACAAACCATTCCTGACTCTGGCCTGGCTTTTTGGAATGGATCACCATCAGGAAAGAAAC CTGGAATAATCTGTCACACGAGGTATTTATTACAGTCAAGGGAAATGCTACGGACTCTGG CAGAAAGCCTGCTGAGCAGATAAGAAGAATCTGATCTCATCTGGAGAAAAGGAAGAGCGT AAAGAAGATTTAAGGTCTGGCCTGGCCAGAGGGAGGAGAGAGAGCAGGAAGATGCAACAG AAAAAGGAAGGCCCTGACAGGAGGGGCCCCGTGTATCCTCACTTTGCAGCCTTATTTGGT TAGAAGCCATTTTCTTTTTCAGCTTCACTTCCCCCAGGAGGGGCGGTGTGTGAACTACGG CTGCCACCTGTTTGGGTAATAAAATGTTCCTGGGACCCATCGCACTTCTTCACATACTGT |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 292-399, - strand, RNAz p=0.758042 | |
| 350-464, - strand, RNAz p=0.954168 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 292-399, - strand, RNAz p=0.758042 | |
| 350-464, - strand, RNAz p=0.954168 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 1-171, gnl|bosTau2|chr9 (52019819-52019648) | |
| 1-171, gnl|canFam2|chr1 (45477194-45477338) | |
| 1-171, gnl|echTel1|scaffold_292508 (86104-85957) | |
| 1-171, gnl|galGal2|chr3 (48149798-48149908) | |
| 1-171, gnl|hg17|chr6 (152581773-152581915) | |
| 1-171, gnl|Hg17|chr6 (152581788-152581959) | |
| 1-171, gnl|loxAfr1|scaffold_24883 (42219-42366) | |
| 1-171, gnl|mm7|chr10 (5277523-5277391) | |
| 1-171, gnl|Mm7|chr10 (5277511-5277230) | |
| 1-171, gnl|oryCun1|scaffold_136703 (3792-3693) | |
| 1-171, gnl|panTro1|chr5 (156099071-156099213) | |
| 1-171, gnl|rheMac2|chr4 (110913778-110913636) | |
| 1-171, gnl|rn3|chr1 (35851612-35851744) | |
| 232-599, gnl|bosTau2|chr9 (52017642-52017288) | |
| 232-599, gnl|canFam2|chr1 (45479195-45479776) | |
| 232-599, gnl|echTel1|scaffold_292508 (84805-84130) | |
| 232-599, gnl|hg17|chr6 (152584692-152585240) | |
| 232-599, gnl|Hg17|chr6 (152584718-152585068) | |
| 232-599, gnl|loxAfr1|scaffold_24883 (44769-45232) | |
| 232-599, gnl|panTro1|chr5 (156101990-156102538) | |
| 232-599, gnl|rheMac2|chr4 (110910830-110910288) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-171, gnl|bosTau2|chr9 (52019819-52019648) | |
| 1-171, gnl|canFam2|chr1 (45477194-45477338) | |
| 1-171, gnl|echTel1|scaffold_292508 (86104-85957) | |
| 1-171, gnl|galGal2|chr3 (48149798-48149908) | |
| 1-171, gnl|hg17|chr6 (152581773-152581915) | |
| 1-171, gnl|Hg17|chr6 (152581788-152581959) | |
| 1-171, gnl|loxAfr1|scaffold_24883 (42219-42366) | |
| 1-171, gnl|mm7|chr10 (5277523-5277391) | |
| 1-171, gnl|Mm7|chr10 (5277511-5277230) | |
| 1-171, gnl|oryCun1|scaffold_136703 (3792-3693) | |
| 1-171, gnl|panTro1|chr5 (156099071-156099213) | |
| 1-171, gnl|rheMac2|chr4 (110913778-110913636) | |
| 1-171, gnl|rn3|chr1 (35851612-35851744) | |
| 232-599, gnl|bosTau2|chr9 (52017642-52017288) | |
| 232-599, gnl|canFam2|chr1 (45479195-45479776) | |
| 232-599, gnl|echTel1|scaffold_292508 (84805-84130) | |
| 232-599, gnl|hg17|chr6 (152584692-152585240) | |
| 232-599, gnl|Hg17|chr6 (152584718-152585068) | |
| 232-599, gnl|loxAfr1|scaffold_24883 (44769-45232) | |
| 232-599, gnl|panTro1|chr5 (156101990-156102538) | |
| 232-599, gnl|rheMac2|chr4 (110910830-110910288) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (0.154178) | |
| ste (0.135208) | |
| ldo (0.0970026) |