Non-Coding RNA Search

Ss1.1-rste03_b6.5

Sequence:


               
               CCCGCAGCCAGGCGGCGGGGGAAGTGTGGACCTCTGTGTAGAAGAGAGACTATCATGGTG
GCCTTCAAAGGGGTCTGGACTCAAGCTTTCTGGAAGGCAGTCACTGCGGAATTTCTGGCT
ATGCTTATCTTTGTCCTCCTCAGCCTAGGATCCACCATCAACTGGGGTGGAGCAGAAAAG
CCCCTACCTGTTGATATGGTTCTCATCTCCCTTTGCTTTGGACTCAGCATTGCAACGATG
GTACAGTGTTTCAGCCACATCAGTGGCGGCCACATCAATCCCGCTGTCACGGTGGCCATG
GTGTGCACCAGGAAGATTAGCATCGCCAAGTCATTCTTTTACATCGCAGCCCAGTGCCTG
GGTGCCATCATTGGAGCCGGGATTCTCTACCTGGTCACCCCTCCCAGTGTGGTGGGGGGC
TTGGGGGTCACCACGGTTCATGGAAATCTTAGCGCTGGTCATGGTCTCCTGGTAGAGTTG
ATAATCACATTTCAGTTGGTGTTTACTATTTTTGCCAGCTGTGATTCCAAACGGACTGAT
GTCACTGGTTCGATAGCTTTAGCAATTGGATTTTCTGTTGCAATTGGACATTTATTTGCA
ATCAATTACACCGGTGCCAGTATGAACCCTGCCCGATCCTTTGGACCTGCAGTTATCATG
GGAAATTGGGAAAACCACTGGATATATTGGGTTGGACCAATAATAGGAGCTGTCCTTGCC
GGCGGCCTTTATGAGTATGTCTTCTGTCCAGATGTTGAACTCAAACGTCGTTTCAAAGAA
GCCTTCAGCAAAGCTAGCCAACAAACAAAAGGGAGCTACATGGAGGTGGATGACAACAGA
AGTCAGGTTGAGACCGAGGACTTGATTCTAAAACCTGGAGTGGTACACGTGATCGATATT
GACCGGGGTGAGGAGAAGAAGGGGAAAGACCCATCTGGAGAGGTGTTATCTTCGGTATGA
CTAGAAGAGAGCACTGAAAGCAGACAGGAGCCCCCAGAACTGTCCTCAGATTTCCTTCCA
CCCATTAAGGAAACAGATTTGTTATAAATTAGACATGTGCAGGTTTGTCGTTTCATGTCA
TATTACTCAGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGCAGCCAGGCGGCGGGGGAAGTGTGGACCTCTGTGTAGAAGAGAGACTATCATGGTG
GCCTTCAAAGGGGTCTGGACTCAAGCTTTCTGGAAGGCAGTCACTGCGGAATTTCTGGCT
ATGCTTATCTTTGTCCTCCTCAGCCTAGGATCCACCATCAACTGGGGTGGAGCAGAAAAG
CCCCTACCTGTTGATATGGTTCTCATCTCCCTTTGCTTTGGACTCAGCATTGCAACGATG
GTACAGTGTTTCAGCCACATCAGTGGCGGCCACATCAATCCCGCTGTCACGGTGGCCATG
GTGTGCACCAGGAAGATTAGCATCGCCAAGTCATTCTTTTACATCGCAGCCCAGTGCCTG
GGTGCCATCATTGGAGCCGGGATTCTCTACCTGGTCACCCCTCCCAGTGTGGTGGGGGGC
TTGGGGGTCACCACGGTTCATGGAAATCTTAGCGCTGGTCATGGTCTCCTGGTAGAGTTG
ATAATCACATTTCAGTTGGTGTTTACTATTTTTGCCAGCTGTGATTCCAAACGGACTGAT
GTCACTGGTTCGATAGCTTTAGCAATTGGATTTTCTGTTGCAATTGGACATTTATTTGCA
ATCAATTACACCGGTGCCAGTATGAACCCTGCCCGATCCTTTGGACCTGCAGTTATCATG
GGAAATTGGGAAAACCACTGGATATATTGGGTTGGACCAATAATAGGAGCTGTCCTTGCC
GGCGGCCTTTATGAGTATGTCTTCTGTCCAGATGTTGAACTCAAACGTCGTTTCAAAGAA
GCCTTCAGCAAAGCTAGCCAACAAACAAAAGGGAGCTACATGGAGGTGGATGACAACAGA
AGTCAGGTTGAGACCGAGGACTTGATTCTAAAACCTGGAGTGGTACACGTGATCGATATT
GACCGGGGTGAGGAGAAGAAGGGGAAAGACCCATCTGGAGAGGTGTTATCTTCGGTATGA
CTAGAAGAGAGCACTGAAAGCAGACAGGAGCCCCCAGAACTGTCCTCAGATTTCCTTCCA
CCCATTAAGGAAACAGATTTGTTATAAATTAGACATGTGCAGGTTTGTCGTTTCATGTCA
TATTACTCAGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               AQP4_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               AQP4_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               222-341, - strand, RNAz p=0.719671

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               222-341, - strand, RNAz p=0.719671

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               22-437, gnl|bosTau2|chr24 (21691146-21690731)
               

               
               22-437, gnl|Hg17|chr18 (22696557-22696142)
               

               
               22-437, gnl|Mm7|chr18 (15749190-15748775)
               


               
               681-1092, gnl|bosTau2|chr24 (21685087-21684676)
               

               
               681-1092, gnl|Hg17|chr18 (22690452-22690041)
               

               
               681-1092, gnl|Mm7|chr18 (15742919-15742508)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-437, gnl|bosTau2|chr24 (21691146-21690731)
               

               
               22-437, gnl|Hg17|chr18 (22696557-22696142)
               

               
               22-437, gnl|Mm7|chr18 (15749190-15748775)
               


               
               681-1092, gnl|bosTau2|chr24 (21685087-21684676)
               

               
               681-1092, gnl|Hg17|chr18 (22690452-22690041)
               

               
               681-1092, gnl|Mm7|chr18 (15742919-15742508)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ste (0.135208)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.135208)
               

               
               spc (0.113366)

	22-437, gnl\|bosTau2\|chr24 (21691146-21690731)
	22-437, gnl\|Hg17\|chr18 (22696557-22696142)
	22-437, gnl\|Mm7\|chr18 (15749190-15748775)

	681-1092, gnl\|bosTau2\|chr24 (21685087-21684676)
	681-1092, gnl\|Hg17\|chr18 (22690452-22690041)
	681-1092, gnl\|Mm7\|chr18 (15742919-15742508)