Ss1.1-rste03_e8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGAAGGAGAAGCCCGAGCTCCGGCGGCGCCGCGGGGCGGCAGTCAAGACCAGAGTCCGA GCTGCCGCTAGCCTCCGGAGAAGGCAGAAGCCAGGAGTACTGCCTGCGGAGCGACGGGTT CGGACGCCCGCTCGCCTTCTGATCTCACCATGTCGCGGGGCTCCATCGAGATTCCCCTCC GGGACACTGACGAGGTCATCGAACTTGACTTCGATCAGTTACCTGAAGGAGATGAAGTTA TCAGTATTCTGAAACAGGAACACACACAACTGCATATATGGATTGCTTTGGCGTTGGAAT ACTACAAGCAAGGAAAAACAGAAGAGTTTGTAAAGCTGTTGGAAGCAGCGCGTATAGATG GCAATTTGGACTACAGAGACCATGAGAAAGACCAGATGACTTGCTTGGATACATTGGCGG CCTATTATGTACAACAGGCTCGAAAGGAAAAGAATAAGGACAACAAGAAAGACCTTATTA CGCAGGCAACCCTGTTGTATACAATGGCAGATAAAATTATTATGTATGATCAGAACCATT TGTTGGGAAGAGCCTGCTTCTGCCTCCTTGAGGGTGACAAAATGGATCAGGCTGACGCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGAAGGAGAAGCCCGAGCTCCGGCGGCGCCGCGGGGCGGCAGTCAAGACCAGAGTCCGA GCTGCCGCTAGCCTCCGGAGAAGGCAGAAGCCAGGAGTACTGCCTGCGGAGCGACGGGTT CGGACGCCCGCTCGCCTTCTGATCTCACCATGTCGCGGGGCTCCATCGAGATTCCCCTCC GGGACACTGACGAGGTCATCGAACTTGACTTCGATCAGTTACCTGAAGGAGATGAAGTTA TCAGTATTCTGAAACAGGAACACACACAACTGCATATATGGATTGCTTTGGCGTTGGAAT ACTACAAGCAAGGAAAAACAGAAGAGTTTGTAAAGCTGTTGGAAGCAGCGCGTATAGATG GCAATTTGGACTACAGAGACCATGAGAAAGACCAGATGACTTGCTTGGATACATTGGCGG CCTATTATGTACAACAGGCTCGAAAGGAAAAGAATAAGGACAACAAGAAAGACCTTATTA CGCAGGCAACCCTGTTGTATACAATGGCAGATAAAATTATTATGTATGATCAGAACCATT TGTTGGGAAGAGCCTGCTTCTGCCTCCTTGAGGGTGACAAAATGGATCAGGCTGACGCAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 417-533, - strand, RNAz p=0.923286 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 417-533, - strand, RNAz p=0.923286 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 1-196, gnl|bosTau2|chr15 (26727494-26727689) | |
| 1-196, gnl|canFam2|chr21 (37103846-37104063) | |
| 1-196, gnl|dasNov1|scaffold_65295 (2524-2317) | |
| 1-196, gnl|echTel1|scaffold_287176 (46954-47154) | |
| 1-196, gnl|galGal2|chr5 (6318945-6318794) | |
| 1-196, gnl|hg17|chr11 (10729300-10729514) | |
| 1-196, gnl|Hg17|chr11 (10729387-10729582) | |
| 1-196, gnl|loxAfr1|scaffold_3868 (9964-10181) | |
| 1-196, gnl|mm7|chr7 (106944449-106944642) | |
| 1-196, gnl|Mm7|chr7 (106944536-106944709) | |
| 1-196, gnl|monDom2|scaffold_10 (61037152-61037338) | |
| 1-196, gnl|oryCun1|scaffold_199582 (39865-40081) | |
| 1-196, gnl|panTro1|chr9 (10965011-10965225) | |
| 1-196, gnl|rn3|chr1 (168894946-168895142) | |
| 283-533, gnl|bosTau2|chr15 (26731366-26731616) | |
| 283-533, gnl|canFam2|chr21 (37107394-37107573) | |
| 283-533, gnl|danRer3|chrNA (151085339-151085184) | |
| 283-533, gnl|echTel1|scaffold_322058 (82130-82313) | |
| 283-533, gnl|fr1|chrUn (37047502-37047331) | |
| 283-533, gnl|galGal2|chr5 (6316701-6316543) | |
| 283-533, gnl|hg17|chr11 (10733051-10733230) | |
| 283-533, gnl|Hg17|chr11 (10733070-10733320) | |
| 283-533, gnl|loxAfr1|scaffold_3868 (13601-13780) | |
| 283-533, gnl|mm7|chr7 (106949188-106949366) | |
| 283-533, gnl|Mm7|chr7 (106949207-106949456) | |
| 283-533, gnl|monDom2|scaffold_10 (61040725-61040904) | |
| 283-533, gnl|panTro1|chr9 (10968758-10968937) | |
| 283-533, gnl|rheMac2|chr14 (61189408-61189230) | |
| 283-533, gnl|rn3|chr1 (168900968-168901146) | |
| 283-533, gnl|tetNig1|chr5 (6293438-6293260) | |
| 283-533, gnl|xenTro1|scaffold_621 (105454-105610) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-196, gnl|bosTau2|chr15 (26727494-26727689) | |
| 1-196, gnl|canFam2|chr21 (37103846-37104063) | |
| 1-196, gnl|dasNov1|scaffold_65295 (2524-2317) | |
| 1-196, gnl|echTel1|scaffold_287176 (46954-47154) | |
| 1-196, gnl|galGal2|chr5 (6318945-6318794) | |
| 1-196, gnl|hg17|chr11 (10729300-10729514) | |
| 1-196, gnl|Hg17|chr11 (10729387-10729582) | |
| 1-196, gnl|loxAfr1|scaffold_3868 (9964-10181) | |
| 1-196, gnl|mm7|chr7 (106944449-106944642) | |
| 1-196, gnl|Mm7|chr7 (106944536-106944709) | |
| 1-196, gnl|monDom2|scaffold_10 (61037152-61037338) | |
| 1-196, gnl|oryCun1|scaffold_199582 (39865-40081) | |
| 1-196, gnl|panTro1|chr9 (10965011-10965225) | |
| 1-196, gnl|rn3|chr1 (168894946-168895142) | |
| 283-533, gnl|bosTau2|chr15 (26731366-26731616) | |
| 283-533, gnl|canFam2|chr21 (37107394-37107573) | |
| 283-533, gnl|danRer3|chrNA (151085339-151085184) | |
| 283-533, gnl|echTel1|scaffold_322058 (82130-82313) | |
| 283-533, gnl|fr1|chrUn (37047502-37047331) | |
| 283-533, gnl|galGal2|chr5 (6316701-6316543) | |
| 283-533, gnl|hg17|chr11 (10733051-10733230) | |
| 283-533, gnl|Hg17|chr11 (10733070-10733320) | |
| 283-533, gnl|loxAfr1|scaffold_3868 (13601-13780) | |
| 283-533, gnl|mm7|chr7 (106949188-106949366) | |
| 283-533, gnl|Mm7|chr7 (106949207-106949456) | |
| 283-533, gnl|monDom2|scaffold_10 (61040725-61040904) | |
| 283-533, gnl|panTro1|chr9 (10968758-10968937) | |
| 283-533, gnl|rheMac2|chr14 (61189408-61189230) | |
| 283-533, gnl|rn3|chr1 (168900968-168901146) | |
| 283-533, gnl|tetNig1|chr5 (6293438-6293260) | |
| 283-533, gnl|xenTro1|scaffold_621 (105454-105610) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ste (0.135208) |