Non-Coding RNA Search

Ss1.1-rste06_l19.5

Sequence:


               
               GCTCAGGTGGGCGCTTTGCCTGGTGCCCAGGAGCCCTCTGACCCCTAGCCACAGAGAACA
GCAGGGTTGGCGGGGGACCAGGTTCTGCCTGACCACCAGCCCCCTTTAGTTCCTAAATCA
GTTTGGCCTTATAGGTGCCCCAGGGCACAGCCCCATTGTTGCTACTGGTTTTTCCTAAGT
CGTGGAGCAAGGACTTTAGATGGCTTTTTCTCCAAGATTCAATCAGGTGGTGCCCAGGAC
GCTGGGGCAGCAGCCAACTCCTGAAAAAAGTCCATGACCATGGACATCTCTGTCTCTACC
CTCCATGGACATGACGCCACCCGGCCTTCTCTTGCACATTGGACAAAGGATGCACCTGAA
CCATTTTCTTACTTTCACCGTCAAATGAGGATTTTTCTCAAAACAGCAGTTGCTGCCAGG
GGGAAGGGAGGGAGGTTTTATTTATTCCCACAGTTTATACTGGGCCTTTTGGAATTACCT
TTTTTTCCCCAAATTTTCCTCTGGCGGTGAGTGTGTCACTGAGCCTGCCATCCTCCGAAG
CCTTACTACCCCAAGCTGCCAGCCAGGAGGGGATAACCACCCTCCCAGAGCTTCTCTCAG
CTCTTTTTTTAAAAGTCCCCAACATAGGATTCTTGCTGGGAAAGGAAGCTTGGTTAAGAA
ATGTCAAACATGGTTTTTACAAGGTCTTGCCCTGTGACGAAGCAGCCACCCCAGTCCAGA
GAGATGCTCAGAACTGGATGTGGGTGAGAGCGCCCTGCCCACAGTGGCCCCGGTGCTCTG
CGCCCACCACCCTGACCACCTGGTCTCAGTAGATGTCCCTAGATGGGCTGAGCCATGTGC
AATAAGAACGTAGATCCTAATGGATCCCCTGAGAAGCTGTATTTCTTGAATTAGAATTCT
GAAATTGTATATCTATAAATATATGTTTATTACGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCAGGTGGGCGCTTTGCCTGGTGCCCAGGAGCCCTCTGACCCCTAGCCACAGAGAACA
GCAGGGTTGGCGGGGGACCAGGTTCTGCCTGACCACCAGCCCCCTTTAGTTCCTAAATCA
GTTTGGCCTTATAGGTGCCCCAGGGCACAGCCCCATTGTTGCTACTGGTTTTTCCTAAGT
CGTGGAGCAAGGACTTTAGATGGCTTTTTCTCCAAGATTCAATCAGGTGGTGCCCAGGAC
GCTGGGGCAGCAGCCAACTCCTGAAAAAAGTCCATGACCATGGACATCTCTGTCTCTACC
CTCCATGGACATGACGCCACCCGGCCTTCTCTTGCACATTGGACAAAGGATGCACCTGAA
CCATTTTCTTACTTTCACCGTCAAATGAGGATTTTTCTCAAAACAGCAGTTGCTGCCAGG
GGGAAGGGAGGGAGGTTTTATTTATTCCCACAGTTTATACTGGGCCTTTTGGAATTACCT
TTTTTTCCCCAAATTTTCCTCTGGCGGTGAGTGTGTCACTGAGCCTGCCATCCTCCGAAG
CCTTACTACCCCAAGCTGCCAGCCAGGAGGGGATAACCACCCTCCCAGAGCTTCTCTCAG
CTCTTTTTTTAAAAGTCCCCAACATAGGATTCTTGCTGGGAAAGGAAGCTTGGTTAAGAA
ATGTCAAACATGGTTTTTACAAGGTCTTGCCCTGTGACGAAGCAGCCACCCCAGTCCAGA
GAGATGCTCAGAACTGGATGTGGGTGAGAGCGCCCTGCCCACAGTGGCCCCGGTGCTCTG
CGCCCACCACCCTGACCACCTGGTCTCAGTAGATGTCCCTAGATGGGCTGAGCCATGTGC
AATAAGAACGTAGATCCTAATGGATCCCCTGAGAAGCTGTATTTCTTGAATTAGAATTCT
GAAATTGTATATCTATAAATATATGTTTATTACGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               385-543, + strand, RNAz p=0.940707

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               385-543, + strand, RNAz p=0.940707

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001002762, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001002762, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-936, gnl|bosTau2|chr28 (21982894-21981954)
               

               
               1-936, gnl|Hg17|chr10 (73763528-73762600)
               

               
               1-936, gnl|Mm7|chr10 (59416575-59417490)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-936, gnl|bosTau2|chr28 (21982894-21981954)
               

               
               1-936, gnl|Hg17|chr10 (73763528-73762600)
               

               
               1-936, gnl|Mm7|chr10 (59416575-59417490)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               fli (0.202881)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               fli (0.202881)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

	1-936, gnl\|bosTau2\|chr28 (21982894-21981954)
	1-936, gnl\|Hg17\|chr10 (73763528-73762600)
	1-936, gnl\|Mm7\|chr10 (59416575-59417490)

	cga (0.279096)
	hlv (0.278513)
	fli (0.202881)
	mgm (0.180343)
	ill (0.175593)
	ton (0.1755)
	hyp (0.142837)
	ste (0.135208)
	pla (0.133672)
	pgl (0.118483)
	jca (0.11396)