Non-Coding RNA Search

Ss1.1-rste06_l3.5

Sequence:


               
               GCAGGCTCATTGGCAGCTTTCTGAGCAGCTGCAAAATATGTTTTTAACTTTAAGTGGAAG
TTGGGATCATCAGCGTCTGGCCTGGAACAGCCACTCTCAGCAAGGGCTCTTTCGGCTCTG
ACAGTCCCTAGCTTTACAGATCGGCACCCCAGTCGTCTGCCTGGTCGTCCTTCCTCGCAG
ATCATCTATTCCAGTCGCCTCGCAACAGCAGCTCGGCGACAGGGGCTGGAACCGGAACGA
GAACTGCTCGCGCGCGCTCAGAGGGCGCCGGCGGCGGCGGCAGCACCGCCCTCCGGGAGG
ACTATGCTGCGAGGCAAGTCCCGGCTCAACGTGGAGTGGCTGGGCTACTCGCCCGGCCTG
CTCCTGGAGCGCAGGCCGCTCCTGGCGGGGCGCACGCCCCGCAGCTCCGGCCGAAATGAA
GGTTCGTTAGCCTCCACTCTGAAGACGCTCCTGTTCTTCACAGCTTTAATGATCACTGTG
CCTATTGGCTTGTATTTCACAACTAAGTCTTATGTTTTCGAAGGTAATCCTAGACCACGA
AACAAGACATTTCCCCCCTAACTCTGAGGTTCTGGGCTTTTAGGACCTCTTTACATCTGT
GAACTGACTAGTCTTCATTTCGCGTCTTCTGTTTGGCTTTTCAAAAATCATGGTGCTCCT
GGGCATCGTCCCTCGTGAACTGAACTCTCCTGGCTCAGTTATTTCGGGCCCGCCGTCCTG
CTCCTTTGTGGN

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGCTCATTGGCAGCTTTCTGAGCAGCTGCAAAATATGTTTTTAACTTTAAGTGGAAG
TTGGGATCATCAGCGTCTGGCCTGGAACAGCCACTCTCAGCAAGGGCTCTTTCGGCTCTG
ACAGTCCCTAGCTTTACAGATCGGCACCCCAGTCGTCTGCCTGGTCGTCCTTCCTCGCAG
ATCATCTATTCCAGTCGCCTCGCAACAGCAGCTCGGCGACAGGGGCTGGAACCGGAACGA
GAACTGCTCGCGCGCGCTCAGAGGGCGCCGGCGGCGGCGGCAGCACCGCCCTCCGGGAGG
ACTATGCTGCGAGGCAAGTCCCGGCTCAACGTGGAGTGGCTGGGCTACTCGCCCGGCCTG
CTCCTGGAGCGCAGGCCGCTCCTGGCGGGGCGCACGCCCCGCAGCTCCGGCCGAAATGAA
GGTTCGTTAGCCTCCACTCTGAAGACGCTCCTGTTCTTCACAGCTTTAATGATCACTGTG
CCTATTGGCTTGTATTTCACAACTAAGTCTTATGTTTTCGAAGGTAATCCTAGACCACGA
AACAAGACATTTCCCCCCTAACTCTGAGGTTCTGGGCTTTTAGGACCTCTTTACATCTGT
GAACTGACTAGTCTTCATTTCGCGTCTTCTGTTTGGCTTTTCAAAAATCATGGTGCTCCT
GGGCATCGTCCCTCGTGAACTGAACTCTCCTGGCTCAGTTATTTCGGGCCCGCCGTCCTG
CTCCTTTGTGGN

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51772102|ref|XP_486699.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51772102|ref|XP_486699.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               295-413, - strand, RNAz p=0.990932

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               295-413, - strand, RNAz p=0.990932

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               144-413, gnl|bosTau2|chrX (11564862-11564601)
               

               
               144-413, gnl|canFam2|chrX (122471610-122472090)
               

               
               144-413, gnl|dasNov1|scaffold_40042 (48764-48292)
               

               
               144-413, gnl|echTel1|scaffold_320506 (82074-81661)
               

               
               144-413, gnl|hg17|chrX (150235582-150236052)
               

               
               144-413, gnl|Hg17|chrX (150235838-150236097)
               

               
               144-413, gnl|loxAfr1|scaffold_19251 (29272-29767)
               

               
               144-413, gnl|mm7|chrX (67202884-67203303)
               

               
               144-413, gnl|Mm7|chrX (67203119-67203348)
               

               
               144-413, gnl|oryCun1|scaffold_174527 (8521-8072)
               

               
               144-413, gnl|rheMac2|chrX (149444363-149444829)
               

               
               144-413, gnl|rn3|chrX (157310284-157310707)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               144-413, gnl|bosTau2|chrX (11564862-11564601)
               

               
               144-413, gnl|canFam2|chrX (122471610-122472090)
               

               
               144-413, gnl|dasNov1|scaffold_40042 (48764-48292)
               

               
               144-413, gnl|echTel1|scaffold_320506 (82074-81661)
               

               
               144-413, gnl|hg17|chrX (150235582-150236052)
               

               
               144-413, gnl|Hg17|chrX (150235838-150236097)
               

               
               144-413, gnl|loxAfr1|scaffold_19251 (29272-29767)
               

               
               144-413, gnl|mm7|chrX (67202884-67203303)
               

               
               144-413, gnl|Mm7|chrX (67203119-67203348)
               

               
               144-413, gnl|oryCun1|scaffold_174527 (8521-8072)
               

               
               144-413, gnl|rheMac2|chrX (149444363-149444829)
               

               
               144-413, gnl|rn3|chrX (157310284-157310707)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nms (0.213858)
               

               
               ton (0.1755)
               

               
               ste (0.135208)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               ton (0.1755)
               

               
               ste (0.135208)

	144-413, gnl\|bosTau2\|chrX (11564862-11564601)
	144-413, gnl\|canFam2\|chrX (122471610-122472090)
	144-413, gnl\|dasNov1\|scaffold_40042 (48764-48292)
	144-413, gnl\|echTel1\|scaffold_320506 (82074-81661)
	144-413, gnl\|hg17\|chrX (150235582-150236052)
	144-413, gnl\|Hg17\|chrX (150235838-150236097)
	144-413, gnl\|loxAfr1\|scaffold_19251 (29272-29767)
	144-413, gnl\|mm7\|chrX (67202884-67203303)
	144-413, gnl\|Mm7\|chrX (67203119-67203348)
	144-413, gnl\|oryCun1\|scaffold_174527 (8521-8072)
	144-413, gnl\|rheMac2\|chrX (149444363-149444829)
	144-413, gnl\|rn3\|chrX (157310284-157310707)