Ss1.1-rste07_d23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTTTTTAAAATGTCCTACAATGTGCATTTATTCCATATCATT ATACAAGGTTTACATACAGTTATAACTCTTAAGAAAATGTTTTTTTCTTCACCATTGTAT GCAGTGCCTAAATCTTTCACTTTAACACGGTGGAAATCCACATGGCATGCTATCCTACAA GTTGCAACGAGCTGCAAATGTGCCAATCAGAAGAAAACAGAAGGCTTACAAGAGCACGAT GGCTCACAAACCCTTGGCTTTAGTGAATTCTGGCAGACGGGATCCATAGTTGCACCTCAT TGTAAAACTCAAGACAAAATAAATTAGCGATGGACAGATTCTAAATAGTAACAATATTGA ACGAAAGACCACAGTGGGACCTTTTGTTTAACGTAGCACCAATCCACACCTGATTGTGTT TCCAACATTAATCTTCCTGTTCATTTATCATTGGCACTTTGAATGGAAATCTTTCTGCTT AATGAGGATTCCTGGGCTGACTAAGCACACTGTGTTGCTAAACTCTCTATGAAGTGTGGC AATGTCAACCTGGGAAATGGCACATTTAAATCATTACTGCCTTGACAGGGGCTCGCCTCT GTGCGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCCCCATCCCCGACCTTCTGTACAATAG AAAGCACAGTGTGTGCCTGGCCCTAAGGCAGGATGTGAAAGAATAAACCAGGGTCAGCTG GAGAAGAGACAAACTGCAGAGCTCAGAGAGGTGGGATATCCAGCTCGATGAGGGGGTCTT GGGAGAAGTGAAGCAAAGAAACTTATATGGAAGTCATATCGTTGAGAGCGTGGTCCAGCT CCTCGCTGATGGCTTTGTACTTCAGTTTCTGAGCGTACAGCTCGTCTTCTAAGTCATCAA TGCTTTTCTCCAATTTAGTTACTGACCTCTCTGCAAACTCGGCCCGAGTTTCAGCCTCCT TCAGCTTGTCAGAAAGGACCTTGATCTCTTCTTCATATTTGTCTTCCTTCTGTGAGTACT TCTCAGCCTGAGCCTCCAGTGACTTCAAGTTGTTCGTCACAGTTTTCAACTCTTCTTCAA GCTCGGCACATTTGCCTTCTGAGAGTTCAGCCCGCTCCTCGGCACGTTCCAGGTCACTCT CAATGATGACCAGCTTACGGGCCACCTCTTCATACTTGCGGTCGGCATCCTCAGCAATGT GCTTGGCTTCTTTCAGCTGGATCTCCTGAATTTCCATTTTCTCCTCATCCTTTTGGGCTC GGCTTTCAATGACTTTCATGCCTCTCTCACTCTCATCTGCTGCCTTCTCAGCCTCCTCAA GTTTCTGTAAAGCTGTTGCCAGTCGCTCCTGGGCACGGTCCAGCTCTTCCTCAACCAGTT GGATGCGTCTGTTCAGAGAAGCTACATCGGCTTCAGCATCGGTGGCCTTTTTCTCCGCCA GCTCCAGCTTCTCCTGGGCATCTTTGAGAGCCTCGGAATATTTGTCCAGTTCATCTTCGG TGGCCTTGAGCTTCTTTTGCAGCGACACCAGCTCATCTTCCAGCTGCTTGCTCCTGTCCT CTGCCGCCTTCTTATCGGCCTCCGCCTGCTCCGCTCGATCCAAGGCGTTCTCCTTGTCGA GCTTGAGCATTTGCATCTTCTTCTTGATGGCGTCCATGGTGGCGGCGGTAAGGGGCCCTG GGGCTGCGGCAGAAGCGGGGAGGCGAGCGCGCGGTGGAGCGGCCGAGCTGGAGTGCGAGT GCTGAGCTGCCTGCTGCTCCCAGATATGTACTTTCCCAAGGGGGCGACCGCATTCCTCAA GACAGCCAATAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTTTTTAAAATGTCCTACAATGTGCATTTATTCCATATCATT ATACAAGGTTTACATACAGTTATAACTCTTAAGAAAATGTTTTTTTCTTCACCATTGTAT GCAGTGCCTAAATCTTTCACTTTAACACGGTGGAAATCCACATGGCATGCTATCCTACAA GTTGCAACGAGCTGCAAATGTGCCAATCAGAAGAAAACAGAAGGCTTACAAGAGCACGAT GGCTCACAAACCCTTGGCTTTAGTGAATTCTGGCAGACGGGATCCATAGTTGCACCTCAT TGTAAAACTCAAGACAAAATAAATTAGCGATGGACAGATTCTAAATAGTAACAATATTGA ACGAAAGACCACAGTGGGACCTTTTGTTTAACGTAGCACCAATCCACACCTGATTGTGTT TCCAACATTAATCTTCCTGTTCATTTATCATTGGCACTTTGAATGGAAATCTTTCTGCTT AATGAGGATTCCTGGGCTGACTAAGCACACTGTGTTGCTAAACTCTCTATGAAGTGTGGC AATGTCAACCTGGGAAATGGCACATTTAAATCATTACTGCCTTGACAGGGGCTCGCCTCT GTGCGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCCCCATCCCCGACCTTCTGTACAATAG AAAGCACAGTGTGTGCCTGGCCCTAAGGCAGGATGTGAAAGAATAAACCAGGGTCAGCTG GAGAAGAGACAAACTGCAGAGCTCAGAGAGGTGGGATATCCAGCTCGATGAGGGGGTCTT GGGAGAAGTGAAGCAAAGAAACTTATATGGAAGTCATATCGTTGAGAGCGTGGTCCAGCT CCTCGCTGATGGCTTTGTACTTCAGTTTCTGAGCGTACAGCTCGTCTTCTAAGTCATCAA TGCTTTTCTCCAATTTAGTTACTGACCTCTCTGCAAACTCGGCCCGAGTTTCAGCCTCCT TCAGCTTGTCAGAAAGGACCTTGATCTCTTCTTCATATTTGTCTTCCTTCTGTGAGTACT TCTCAGCCTGAGCCTCCAGTGACTTCAAGTTGTTCGTCACAGTTTTCAACTCTTCTTCAA GCTCGGCACATTTGCCTTCTGAGAGTTCAGCCCGCTCCTCGGCACGTTCCAGGTCACTCT CAATGATGACCAGCTTACGGGCCACCTCTTCATACTTGCGGTCGGCATCCTCAGCAATGT GCTTGGCTTCTTTCAGCTGGATCTCCTGAATTTCCATTTTCTCCTCATCCTTTTGGGCTC GGCTTTCAATGACTTTCATGCCTCTCTCACTCTCATCTGCTGCCTTCTCAGCCTCCTCAA GTTTCTGTAAAGCTGTTGCCAGTCGCTCCTGGGCACGGTCCAGCTCTTCCTCAACCAGTT GGATGCGTCTGTTCAGAGAAGCTACATCGGCTTCAGCATCGGTGGCCTTTTTCTCCGCCA GCTCCAGCTTCTCCTGGGCATCTTTGAGAGCCTCGGAATATTTGTCCAGTTCATCTTCGG TGGCCTTGAGCTTCTTTTGCAGCGACACCAGCTCATCTTCCAGCTGCTTGCTCCTGTCCT CTGCCGCCTTCTTATCGGCCTCCGCCTGCTCCGCTCGATCCAAGGCGTTCTCCTTGTCGA GCTTGAGCATTTGCATCTTCTTCTTGATGGCGTCCATGGTGGCGGCGGTAAGGGGCCCTG GGGCTGCGGCAGAAGCGGGGAGGCGAGCGCGCGGTGGAGCGGCCGAGCTGGAGTGCGAGT GCTGAGCTGCCTGCTGCTCCCAGATATGTACTTTCCCAAGGGGGCGACCGCATTCCTCAA GACAGCCAATAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 683-800, + strand, RNAz p=0.681415 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 683-800, + strand, RNAz p=0.681415 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 226-608, gnl|bosTau2|chr10 (30912949-30912576) | |
| 226-608, gnl|Hg17|chr15 (61150975-61150570) | |
| 226-608, gnl|Mm7|chr9 (67054264-67054658) | |
| 644-809, gnl|bosTau2|chr10 (30907054-30906888) | |
| 644-809, gnl|Hg17|chr15 (61145310-61145145) | |
| 644-809, gnl|Mm7|chr9 (67059475-67059639) | |
| 878-1093, gnl|bosTau2|chr8 (17405619-17405407) | |
| 878-1093, gnl|Hg17|chr3 (27650140-27649925) | |
| 878-1093, gnl|Mm7|chr17 (20185623-20185838) | |
| 1284-1422, gnl|bosTau2|chr10 (30898758-30898620) | |
| 1284-1422, gnl|canFam2|chr30 (30647026-30647180) | |
| 1284-1422, gnl|danRer3|chr18 (46365359-46365513) | |
| 1284-1422, gnl|dasNov1|scaffold_7454 (58860-59015) | |
| 1284-1422, gnl|echTel1|scaffold_288449 (565-719) | |
| 1284-1422, gnl|fr1|chrUn (201006527-201006678) | |
| 1284-1422, gnl|galGal2|chr10 (4961794-4961651) | |
| 1284-1422, gnl|hg17|chr15 (61136233-61136387) | |
| 1284-1422, gnl|Hg17|chr15 (61136370-61136232) | |
| 1284-1422, gnl|loxAfr1|scaffold_46717 (13836-13991) | |
| 1284-1422, gnl|mm7|chr9 (67067603-67067450) | |
| 1284-1422, gnl|Mm7|chr9 (67067464-67067602) | |
| 1284-1422, gnl|monDom2|scaffold_12 (50774535-50774381) | |
| 1284-1422, gnl|oryCun1|scaffold_183267 (44066-43912) | |
| 1284-1422, gnl|panTro1|chr16 (61592303-61592457) | |
| 1284-1422, gnl|rheMac2|chr7 (41442060-41442214) | |
| 1284-1422, gnl|rn3|chr8 (71364024-71363870) | |
| 1284-1422, gnl|tetNig1|chr5 (2575381-2575243) | |
| 1284-1422, gnl|xenTro1|scaffold_62 (1109650-1109793) | |
| 1544-1812, gnl|bosTau2|chr10 (30883789-30883521) | |
| 1544-1812, gnl|Hg17|chr15 (61122195-61121927) | |
| 1544-1812, gnl|Mm7|chr9 (67080489-67080755) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 226-608, gnl|bosTau2|chr10 (30912949-30912576) | |
| 226-608, gnl|Hg17|chr15 (61150975-61150570) | |
| 226-608, gnl|Mm7|chr9 (67054264-67054658) | |
| 644-809, gnl|bosTau2|chr10 (30907054-30906888) | |
| 644-809, gnl|Hg17|chr15 (61145310-61145145) | |
| 644-809, gnl|Mm7|chr9 (67059475-67059639) | |
| 878-1093, gnl|bosTau2|chr8 (17405619-17405407) | |
| 878-1093, gnl|Hg17|chr3 (27650140-27649925) | |
| 878-1093, gnl|Mm7|chr17 (20185623-20185838) | |
| 1284-1422, gnl|bosTau2|chr10 (30898758-30898620) | |
| 1284-1422, gnl|canFam2|chr30 (30647026-30647180) | |
| 1284-1422, gnl|danRer3|chr18 (46365359-46365513) | |
| 1284-1422, gnl|dasNov1|scaffold_7454 (58860-59015) | |
| 1284-1422, gnl|echTel1|scaffold_288449 (565-719) | |
| 1284-1422, gnl|fr1|chrUn (201006527-201006678) | |
| 1284-1422, gnl|galGal2|chr10 (4961794-4961651) | |
| 1284-1422, gnl|hg17|chr15 (61136233-61136387) | |
| 1284-1422, gnl|Hg17|chr15 (61136370-61136232) | |
| 1284-1422, gnl|loxAfr1|scaffold_46717 (13836-13991) | |
| 1284-1422, gnl|mm7|chr9 (67067603-67067450) | |
| 1284-1422, gnl|Mm7|chr9 (67067464-67067602) | |
| 1284-1422, gnl|monDom2|scaffold_12 (50774535-50774381) | |
| 1284-1422, gnl|oryCun1|scaffold_183267 (44066-43912) | |
| 1284-1422, gnl|panTro1|chr16 (61592303-61592457) | |
| 1284-1422, gnl|rheMac2|chr7 (41442060-41442214) | |
| 1284-1422, gnl|rn3|chr8 (71364024-71363870) | |
| 1284-1422, gnl|tetNig1|chr5 (2575381-2575243) | |
| 1284-1422, gnl|xenTro1|scaffold_62 (1109650-1109793) | |
| 1544-1812, gnl|bosTau2|chr10 (30883789-30883521) | |
| 1544-1812, gnl|Hg17|chr15 (61122195-61121927) | |
| 1544-1812, gnl|Mm7|chr9 (67080489-67080755) |
| Expressed library(ies): 72 entry(ies) | More info |
| Expressed library(ies): 72 entry(ies) | Help | Less info |
| tbr (30.6815) | |
| sme (21.9914) | |
| ste (17.1714) | |
| ldo (17.1695) | |
| hea (12.8834) | |
| nms (12.1899) | |
| hlv (11.419) | |
| gul (10.4777) | |
| che (8.99673) | |
| bfe (7.7926) | |
| bla (7.58518) | |
| lin (7.13454) | |
| ssp (7.04703) | |
| aor (6.44405) | |
| mas (4.83701) | |
| isp (4.3609) | |
| mga (3.52451) | |
| ctl (3.36752) | |
| vin (2.99302) | |
| spl (2.86369) | |
| ski (2.78797) | |
| ton (2.6325) | |
| lyg (2.26274) | |
| rec (2.24991) | |
| tra (1.96947) | |
| mgp (1.84544) | |
| liv (1.60913) | |
| ova (1.29132) | |
| ese (1.26502) | |
| eru (1.20048) | |
| ret (1.1586) | |
| cki (1.15664) | |
| sug (1.14562) | |
| nep (1.10355) | |
| sag (1.09629) | |
| pro (1.02407) | |
| nco (0.970403) | |
| mgm (0.901713) | |
| eye (0.852515) | |
| fat (0.737137) | |
| sin (0.69979) | |
| eje (0.691836) | |
| tes (0.623441) | |
| pty (0.570858) | |
| ute (0.531138) | |
| cut (0.509771) | |
| nje (0.49776) | |
| nbm (0.496623) | |
| nca (0.410621) | |
| cov (0.396458) | |
| kid (0.389206) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| cmu (0.372787) | |
| mcp (0.341297) | |
| spc (0.340097) | |
| lun (0.300978) | |
| cst (0.280073) | |
| nmm (0.265604) | |
| thg (0.253582) | |
| eep (0.245128) | |
| pan (0.23596) | |
| ece (0.229305) | |
| sto (0.179824) | |
| duo (0.172801) | |
| csp (0.161186) | |
| fco (0.157208) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| cly (0.120642) | |
| ebs (0.118301) |
| Expressed library(ies): 72 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (30.6815) | |
| sme (21.9914) | |
| ste (17.1714) | |
| ldo (17.1695) | |
| hea (12.8834) | |
| nms (12.1899) | |
| hlv (11.419) | |
| gul (10.4777) | |
| che (8.99673) | |
| bfe (7.7926) | |
| bla (7.58518) | |
| lin (7.13454) | |
| ssp (7.04703) | |
| aor (6.44405) | |
| mas (4.83701) | |
| isp (4.3609) | |
| mga (3.52451) | |
| ctl (3.36752) | |
| vin (2.99302) | |
| spl (2.86369) | |
| ski (2.78797) | |
| ton (2.6325) | |
| lyg (2.26274) | |
| rec (2.24991) | |
| tra (1.96947) | |
| mgp (1.84544) | |
| liv (1.60913) | |
| ova (1.29132) | |
| ese (1.26502) | |
| eru (1.20048) | |
| ret (1.1586) | |
| cki (1.15664) | |
| sug (1.14562) | |
| nep (1.10355) | |
| sag (1.09629) | |
| pro (1.02407) | |
| nco (0.970403) | |
| mgm (0.901713) | |
| eye (0.852515) | |
| fat (0.737137) | |
| sin (0.69979) | |
| eje (0.691836) | |
| tes (0.623441) | |
| pty (0.570858) | |
| ute (0.531138) | |
| cut (0.509771) | |
| nje (0.49776) | |
| nbm (0.496623) | |
| nca (0.410621) | |
| cov (0.396458) | |
| kid (0.389206) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| cmu (0.372787) | |
| mcp (0.341297) | |
| spc (0.340097) | |
| lun (0.300978) | |
| cst (0.280073) | |
| nmm (0.265604) | |
| thg (0.253582) | |
| eep (0.245128) | |
| pan (0.23596) | |
| ece (0.229305) | |
| sto (0.179824) | |
| duo (0.172801) | |
| csp (0.161186) | |
| fco (0.157208) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| cly (0.120642) | |
| ebs (0.118301) |