Non-Coding RNA Search

Ss1.1-rste08_k15.5

Sequence:


               
               ACAGAAAGTTCTTCACAGGTGATTGCAGTTACTTCAGAACAGTGTAATACAAATTCTCTT
GAAAATGTGCAAACCAAAGCACGCAAAATTAGGAGACATAAAAAAGAAAAGGAAGAGAGA
AAACGCAAGAAGCCGGTTTCTCAATCTCCTGAGTTTCCAACAAGATATAGTCCCTACAGA
CCTTACCGATGTGTTCATCAGGGTTGTTTTGCTGCCTTTACAATACAGCAGAACTTAATT
CTGCATTACCAGGCAGTACACAAATCAGATCTACCTGCATTTACTGCAGAGGTTGAAGAG
GAATGTGAAGCTGGTAAAGAAAGTGAAGAAATTGAAACTAAACAAACTGTGAAAGAATTC
CGATGTCAGGTGAGTGACTGTTCTCGAATTTTCCAGGCAATTACTGGCCTAATACAACAC
TACATGAAACTTCATGAGATGTCCCCTGAGGAAATTGAAAGTATGACTGCTTCTGTGGAT
GTTGGGAAGTTCCCATGTGATCAGTCAGAGTGTAAATCTTCATTTACCACGTATTTGAAC
TATGTTGTTCACCTTGAGGCAGACCATGGCATTGGGATAAGAGGAAGTAAAACTGAAGAA
GATGGCATATTCAAGTGTGACTGTGAAGGTTGTGACCGAATATATGCAACTCGTTCTAAT
CTCCTTCGACACATTTTTAATAAGCATAATGACAAACATAAAGCTCACCTGATTCGGCCA
AGAAGATTAACACCTGGTCAGGAAAATATATCAAGCAAGGCAAACCAAGACAAGGCAAAA
TCTAAACACCGGGGGACAAAATACAGAGCTGGAAGGGAAGGAATCAAAATGCCTAAGACT
AAACGAAAGAAAAAAAATAACTTGGAAAACAAGACTGCAAAGATTGTGCAGATTGAAGAA
AATAAGCCTTATTCTCTGAAACGTGGAAAGCATGTATATTCTATAAAGGCTAGAAACGAT
GCCTTATCTGAGTGTACAAGCAGATTTGTAACCCAGTATCCCTGCATGATAAAGGGATGT
ACGTCGGTTGTTACAAGTGAAAGCAATATAATTAGACATTATAAATGCCACAAATTATCT
AAGGCATTTACATCGCAACACCGCAACCTTCTCATTGTTTTCAAACGGTGTTGCAACTCA
CAGCTAAAGGAAGCTTCTGAGCAAGAAGTTGAAAAGAGTGATGCGAAAGATTCTGACACA
GGTTTATCAGAGAACAATGATAACTCAAGAACAACTACAGTTCCACAGAAAGGAGTTGAA
AAAAATGAAAAGGATGAAATGGACGAACTAACAGAATTATTTATTACCAAATTAATCAAT
GAAGACAACACAAGTGTGGAGACCCAAGCTCAGACCTCTTCAAATGTAAGTAATGATTTG
GCAGAAAATAACCCCTGCCAATCAGAAAAACAAAAAGTGAGTAATTTGAAGAGAGTTAAT
AAAGAAAAAAATGTCTCCCAAAGTAAAAAGAGGAAAGTTGAAAAAACTGAACCAGCATCA
GCAGCTGAATTAAGTAGTGTGCATAAGGAAGAGGAAACTGCTGTTGCCATTCAAACCACG
GAGGAGCATCCTGCATCTTTTGACTGGAGCTCGTTTAAACCAATGGGGTTTGAAGTATCA
TTTCTGAAGTTTCTTGAGGAGTCTGCAGTGAAGCAGAAGAAAAATACTGACAAAGACCAT
CCAAATAGTGGGAATAAAAAAGGATCCCATTCAAATTCAAGAAAAAATGTTGACAAGACT
GCTGTGACCAGTGGAAATCATATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGAAAGTTCTTCACAGGTGATTGCAGTTACTTCAGAACAGTGTAATACAAATTCTCTT
GAAAATGTGCAAACCAAAGCACGCAAAATTAGGAGACATAAAAAAGAAAAGGAAGAGAGA
AAACGCAAGAAGCCGGTTTCTCAATCTCCTGAGTTTCCAACAAGATATAGTCCCTACAGA
CCTTACCGATGTGTTCATCAGGGTTGTTTTGCTGCCTTTACAATACAGCAGAACTTAATT
CTGCATTACCAGGCAGTACACAAATCAGATCTACCTGCATTTACTGCAGAGGTTGAAGAG
GAATGTGAAGCTGGTAAAGAAAGTGAAGAAATTGAAACTAAACAAACTGTGAAAGAATTC
CGATGTCAGGTGAGTGACTGTTCTCGAATTTTCCAGGCAATTACTGGCCTAATACAACAC
TACATGAAACTTCATGAGATGTCCCCTGAGGAAATTGAAAGTATGACTGCTTCTGTGGAT
GTTGGGAAGTTCCCATGTGATCAGTCAGAGTGTAAATCTTCATTTACCACGTATTTGAAC
TATGTTGTTCACCTTGAGGCAGACCATGGCATTGGGATAAGAGGAAGTAAAACTGAAGAA
GATGGCATATTCAAGTGTGACTGTGAAGGTTGTGACCGAATATATGCAACTCGTTCTAAT
CTCCTTCGACACATTTTTAATAAGCATAATGACAAACATAAAGCTCACCTGATTCGGCCA
AGAAGATTAACACCTGGTCAGGAAAATATATCAAGCAAGGCAAACCAAGACAAGGCAAAA
TCTAAACACCGGGGGACAAAATACAGAGCTGGAAGGGAAGGAATCAAAATGCCTAAGACT
AAACGAAAGAAAAAAAATAACTTGGAAAACAAGACTGCAAAGATTGTGCAGATTGAAGAA
AATAAGCCTTATTCTCTGAAACGTGGAAAGCATGTATATTCTATAAAGGCTAGAAACGAT
GCCTTATCTGAGTGTACAAGCAGATTTGTAACCCAGTATCCCTGCATGATAAAGGGATGT
ACGTCGGTTGTTACAAGTGAAAGCAATATAATTAGACATTATAAATGCCACAAATTATCT
AAGGCATTTACATCGCAACACCGCAACCTTCTCATTGTTTTCAAACGGTGTTGCAACTCA
CAGCTAAAGGAAGCTTCTGAGCAAGAAGTTGAAAAGAGTGATGCGAAAGATTCTGACACA
GGTTTATCAGAGAACAATGATAACTCAAGAACAACTACAGTTCCACAGAAAGGAGTTGAA
AAAAATGAAAAGGATGAAATGGACGAACTAACAGAATTATTTATTACCAAATTAATCAAT
GAAGACAACACAAGTGTGGAGACCCAAGCTCAGACCTCTTCAAATGTAAGTAATGATTTG
GCAGAAAATAACCCCTGCCAATCAGAAAAACAAAAAGTGAGTAATTTGAAGAGAGTTAAT
AAAGAAAAAAATGTCTCCCAAAGTAAAAAGAGGAAAGTTGAAAAAACTGAACCAGCATCA
GCAGCTGAATTAAGTAGTGTGCATAAGGAAGAGGAAACTGCTGTTGCCATTCAAACCACG
GAGGAGCATCCTGCATCTTTTGACTGGAGCTCGTTTAAACCAATGGGGTTTGAAGTATCA
TTTCTGAAGTTTCTTGAGGAGTCTGCAGTGAAGCAGAAGAAAAATACTGACAAAGACCAT
CCAAATAGTGGGAATAAAAAAGGATCCCATTCAAATTCAAGAAAAAATGTTGACAAGACT
GCTGTGACCAGTGGAAATCATATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|39795252|gb|AAH63594.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|39795252|gb|AAH63594.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               40-159, - strand, RNAz p=0.987819
               

               
               200-319, - strand, RNAz p=0.576333
               

               
               837-1156, - strand, RNAz p=0.770946
               

               
               1554-1713, - strand, RNAz p=0.867471

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.987819
               

               
               200-319, - strand, RNAz p=0.576333
               

               
               837-1156, - strand, RNAz p=0.770946
               

               
               1554-1713, - strand, RNAz p=0.867471

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1762, gnl|bosTau2|chr9 (34998981-34997220)
               

               
               1-1762, gnl|Hg17|chr6 (88026223-88027990)
               

               
               1-1762, gnl|Mm7|chr4 (34945646-34943888)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1762, gnl|bosTau2|chr9 (34998981-34997220)
               

               
               1-1762, gnl|Hg17|chr6 (88026223-88027990)
               

               
               1-1762, gnl|Mm7|chr4 (34945646-34943888)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ste (0.135208)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	40-159, - strand, RNAz p=0.987819
	200-319, - strand, RNAz p=0.576333
	837-1156, - strand, RNAz p=0.770946
	1554-1713, - strand, RNAz p=0.867471

	1-1762, gnl\|bosTau2\|chr9 (34998981-34997220)
	1-1762, gnl\|Hg17\|chr6 (88026223-88027990)
	1-1762, gnl\|Mm7\|chr4 (34945646-34943888)

	ste (0.135208)
	ute (0.132784)
	bla (0.124347)
	cty (0.10408)
	ldo (0.0970026)