Non-Coding RNA Search

Ss1.1-rste11_l22.5

Sequence:


               
               GCGGCCGAGGAGGAGGAGGGGCAAGCTGCGGCGGCGAAGGGCTCCAGACCCAGTTCCTGG
ACCTGCCCTGGAAAAGAAGTATCCAGTAGAGATGAGCTCACTGCAGTTACTTAATTAAAA
ATTTGTAAGCTGCAAAAATGGCAATGGGCCAACCAAGAACAGCTACCATTTGAATTTTTC
TATTTCCAGAATAATAATAACCTGTGGCACCAGTCAAGTTTAGCCTCTGTAATTGCCTTA
CTATGAAACCTATAATAACCAGAACTTTACTTTTAAAACTTGTCATCTTGCTTTAAAGTT
TGGTAACATCCCTAACATCTAGGTAACATGCAGCTAGTATTGACTTTAACATAACTTTTG
CCTGAATATTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGAGGAGGAGGAGGGGCAAGCTGCGGCGGCGAAGGGCTCCAGACCCAGTTCCTGG
ACCTGCCCTGGAAAAGAAGTATCCAGTAGAGATGAGCTCACTGCAGTTACTTAATTAAAA
ATTTGTAAGCTGCAAAAATGGCAATGGGCCAACCAAGAACAGCTACCATTTGAATTTTTC
TATTTCCAGAATAATAATAACCTGTGGCACCAGTCAAGTTTAGCCTCTGTAATTGCCTTA
CTATGAAACCTATAATAACCAGAACTTTACTTTTAAAACTTGTCATCTTGCTTTAAAGTT
TGGTAACATCCCTAACATCTAGGTAACATGCAGCTAGTATTGACTTTAACATAACTTTTG
CCTGAATATTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-158, - strand, RNAz p=0.957674

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-158, - strand, RNAz p=0.957674

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               40-372, gnl|bosTau2|chr23 (25044502-25044834)
               

               
               40-372, gnl|canFam2|chr1 (43190538-43191446)
               

               
               40-372, gnl|dasNov1|scaffold_16283 (43033-42122)
               

               
               40-372, gnl|echTel1|scaffold_296111 (2368-3243)
               

               
               40-372, gnl|hg17|chr6 (149705060-149705958)
               

               
               40-372, gnl|Hg17|chr6 (149705513-149705845)
               

               
               40-372, gnl|loxAfr1|scaffold_20739 (6992-6091)
               

               
               40-372, gnl|mm7|chr10 (7633880-7633022)
               

               
               40-372, gnl|Mm7|chr10 (7633457-7633147)
               

               
               40-372, gnl|oryCun1|scaffold_214483 (44198-43317)
               

               
               40-372, gnl|panTro1|chr5 (153160909-153161807)
               

               
               40-372, gnl|rheMac2|chr4 (113952704-113951816)
               

               
               40-372, gnl|rn3|chr1 (2595029-2594214)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-372, gnl|bosTau2|chr23 (25044502-25044834)
               

               
               40-372, gnl|canFam2|chr1 (43190538-43191446)
               

               
               40-372, gnl|dasNov1|scaffold_16283 (43033-42122)
               

               
               40-372, gnl|echTel1|scaffold_296111 (2368-3243)
               

               
               40-372, gnl|hg17|chr6 (149705060-149705958)
               

               
               40-372, gnl|Hg17|chr6 (149705513-149705845)
               

               
               40-372, gnl|loxAfr1|scaffold_20739 (6992-6091)
               

               
               40-372, gnl|mm7|chr10 (7633880-7633022)
               

               
               40-372, gnl|Mm7|chr10 (7633457-7633147)
               

               
               40-372, gnl|oryCun1|scaffold_214483 (44198-43317)
               

               
               40-372, gnl|panTro1|chr5 (153160909-153161807)
               

               
               40-372, gnl|rheMac2|chr4 (113952704-113951816)
               

               
               40-372, gnl|rn3|chr1 (2595029-2594214)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               sag (0.182715)
               

               
               ste (0.135208)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               ste (0.135208)

	40-372, gnl\|bosTau2\|chr23 (25044502-25044834)
	40-372, gnl\|canFam2\|chr1 (43190538-43191446)
	40-372, gnl\|dasNov1\|scaffold_16283 (43033-42122)
	40-372, gnl\|echTel1\|scaffold_296111 (2368-3243)
	40-372, gnl\|hg17\|chr6 (149705060-149705958)
	40-372, gnl\|Hg17\|chr6 (149705513-149705845)
	40-372, gnl\|loxAfr1\|scaffold_20739 (6992-6091)
	40-372, gnl\|mm7\|chr10 (7633880-7633022)
	40-372, gnl\|Mm7\|chr10 (7633457-7633147)
	40-372, gnl\|oryCun1\|scaffold_214483 (44198-43317)
	40-372, gnl\|panTro1\|chr5 (153160909-153161807)
	40-372, gnl\|rheMac2\|chr4 (113952704-113951816)
	40-372, gnl\|rn3\|chr1 (2595029-2594214)