Ss1.1-rste11_o24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTACACGGGTCATTTTAAAGGGCAATGAAGACTATATTAATGCAAATTATATAAATATG GAAATTCCTTCTTCTAGAATTATAAATCAGTACATTGCTTGTCAAGGGCCATTACCACAC ACTTGTACTGATTTTTGGCAGATGACTTGGGAACAAGGGTCCTCCATGGTTGTCATGTTG ACCACACAAGTTGAACGGGGCAGAGTTAAATGTCACCAGTATTGGCCAGAACCCACAGGA AGTTCATCCTATGGATGCTACCAAGTCACCTGTCACTCAGAAGAAGGAAACACTGCCTAT GTCTTCAGGAAGATGACACTATTTAACCAGGAGAAAAATGAGAGTCGTCAACTCACTCAG ATCCAGTATATAGCCTGGCCTGACCATGGGGTCCCTGATGATTCAAGTGACTTTCTGGAT TTTGTTTGTCATGTACGAAATAAGAGGGCCGGCAAGGAAGAACCTATTGTTGTTCATTGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTACACGGGTCATTTTAAAGGGCAATGAAGACTATATTAATGCAAATTATATAAATATG GAAATTCCTTCTTCTAGAATTATAAATCAGTACATTGCTTGTCAAGGGCCATTACCACAC ACTTGTACTGATTTTTGGCAGATGACTTGGGAACAAGGGTCCTCCATGGTTGTCATGTTG ACCACACAAGTTGAACGGGGCAGAGTTAAATGTCACCAGTATTGGCCAGAACCCACAGGA AGTTCATCCTATGGATGCTACCAAGTCACCTGTCACTCAGAAGAAGGAAACACTGCCTAT GTCTTCAGGAAGATGACACTATTTAACCAGGAGAAAAATGAGAGTCGTCAACTCACTCAG ATCCAGTATATAGCCTGGCCTGACCATGGGGTCCCTGATGATTCAAGTGACTTTCTGGAT TTTGTTTGTCATGTACGAAATAAGAGGGCCGGCAAGGAAGAACCTATTGTTGTTCATTGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 58-176, - strand, RNAz p=0.699874 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 58-176, - strand, RNAz p=0.699874 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 58-206, gnl|bosTau2|chr2 (43824991-43824843) | |
| 58-206, gnl|canFam2|chr19 (33119481-33119349) | |
| 58-206, gnl|canFam2|chr19 (33119495-33119343) | |
| 58-206, gnl|danRer3|chr9 (27622624-27622492) | |
| 58-206, gnl|danRer3|chr9 (27622638-27622486) | |
| 58-206, gnl|dasNov1|scaffold_147515 (316-184) | |
| 58-206, gnl|dasNov1|scaffold_147515 (330-182) | |
| 58-206, gnl|echTel1|scaffold_300675 (4078-3946) | |
| 58-206, gnl|echTel1|scaffold_300675 (4092-3940) | |
| 58-206, gnl|fr1|chrUn (147460120-147460252) | |
| 58-206, gnl|fr1|chrUn (147460106-147460258) | |
| 58-206, gnl|galGal2|chr7 (26119351-26119483) | |
| 58-206, gnl|galGal2|chr7 (26119337-26119489) | |
| 58-206, gnl|hg17|chr2 (120434614-120434766) | |
| 58-206, gnl|Hg17|chr2 (120434613-120434761) | |
| 58-206, gnl|hg17|chr8 (6565320-6565452) | |
| 58-206, gnl|loxAfr1|scaffold_10405 (32745-32897) | |
| 58-206, gnl|loxAfr1|scaffold_85006 (628-761) | |
| 58-206, gnl|mm7|chr1 (119540701-119540569) | |
| 58-206, gnl|mm7|chr1 (119540715-119540563) | |
| 58-206, gnl|Mm7|chr1 (119540714-119540566) | |
| 58-206, gnl|monDom2|scaffold_2 (9485345-9485193) | |
| 58-206, gnl|oryCun1|scaffold_99276 (2363-2495) | |
| 58-206, gnl|oryCun1|scaffold_99276 (2349-2495) | |
| 58-206, gnl|panTro1|chr13 (6452790-6452942) | |
| 58-206, gnl|panTro1|chr7 (6897238-6897370) | |
| 58-206, gnl|rheMac2|chr13 (126159486-126159638) | |
| 58-206, gnl|rheMac2|chr8 (6804107-6804239) | |
| 58-206, gnl|rn3|chr13 (32461817-32461685) | |
| 58-206, gnl|rn3|chr13 (32461831-32461679) | |
| 58-206, gnl|tetNig1|chr2 (15672693-15672561) | |
| 58-206, gnl|tetNig1|chr2 (15672707-15672555) | |
| 58-206, gnl|xenTro1|scaffold_398 (511640-511489) | |
| 321-480, gnl|bosTau2|chr2 (43815983-43815825) | |
| 321-480, gnl|Hg17|chr2 (120439291-120439449) | |
| 321-480, gnl|Mm7|chr1 (119536228-119536070) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 58-206, gnl|bosTau2|chr2 (43824991-43824843) | |
| 58-206, gnl|canFam2|chr19 (33119481-33119349) | |
| 58-206, gnl|canFam2|chr19 (33119495-33119343) | |
| 58-206, gnl|danRer3|chr9 (27622624-27622492) | |
| 58-206, gnl|danRer3|chr9 (27622638-27622486) | |
| 58-206, gnl|dasNov1|scaffold_147515 (316-184) | |
| 58-206, gnl|dasNov1|scaffold_147515 (330-182) | |
| 58-206, gnl|echTel1|scaffold_300675 (4078-3946) | |
| 58-206, gnl|echTel1|scaffold_300675 (4092-3940) | |
| 58-206, gnl|fr1|chrUn (147460120-147460252) | |
| 58-206, gnl|fr1|chrUn (147460106-147460258) | |
| 58-206, gnl|galGal2|chr7 (26119351-26119483) | |
| 58-206, gnl|galGal2|chr7 (26119337-26119489) | |
| 58-206, gnl|hg17|chr2 (120434614-120434766) | |
| 58-206, gnl|Hg17|chr2 (120434613-120434761) | |
| 58-206, gnl|hg17|chr8 (6565320-6565452) | |
| 58-206, gnl|loxAfr1|scaffold_10405 (32745-32897) | |
| 58-206, gnl|loxAfr1|scaffold_85006 (628-761) | |
| 58-206, gnl|mm7|chr1 (119540701-119540569) | |
| 58-206, gnl|mm7|chr1 (119540715-119540563) | |
| 58-206, gnl|Mm7|chr1 (119540714-119540566) | |
| 58-206, gnl|monDom2|scaffold_2 (9485345-9485193) | |
| 58-206, gnl|oryCun1|scaffold_99276 (2363-2495) | |
| 58-206, gnl|oryCun1|scaffold_99276 (2349-2495) | |
| 58-206, gnl|panTro1|chr13 (6452790-6452942) | |
| 58-206, gnl|panTro1|chr7 (6897238-6897370) | |
| 58-206, gnl|rheMac2|chr13 (126159486-126159638) | |
| 58-206, gnl|rheMac2|chr8 (6804107-6804239) | |
| 58-206, gnl|rn3|chr13 (32461817-32461685) | |
| 58-206, gnl|rn3|chr13 (32461831-32461679) | |
| 58-206, gnl|tetNig1|chr2 (15672693-15672561) | |
| 58-206, gnl|tetNig1|chr2 (15672707-15672555) | |
| 58-206, gnl|xenTro1|scaffold_398 (511640-511489) | |
| 321-480, gnl|bosTau2|chr2 (43815983-43815825) | |
| 321-480, gnl|Hg17|chr2 (120439291-120439449) | |
| 321-480, gnl|Mm7|chr1 (119536228-119536070) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cte (0.29274) | |
| isp (0.150376) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ldo (0.0970026) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| isp (0.150376) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ldo (0.0970026) |