Non-Coding RNA Search

Ss1.1-rste12_a6.5

Sequence:


               
               TGGAGAGGCGCCAGATTTAGCGCTGGGCTTAATGGGTTAGTGCAGCCTCCGGGCCACGCA
GGAGCAAGTCGCGCCTGAGCCGGCTTCCAGAGCAGCACGTGGGCTTTTCCTAAGAATGGG
ACTCAGGTAGCAGAGTGGCTTCTGAAGGTTAAGAACACAAACAAGGGCCTGGCCTACGAG
GAACATTTCCCCTTCAGCTGAGAATTTCTAGAAATTCTCATGCTGGGCTAGAGATGGACT
TTCGAAAATAAAAATGACCCTCTTTTCCGTCTTAGTGTTTCCTAGACTTTAGACAGTGAT
TACTTTTGTGCCAAAAAAAAGTACCGTAAGAAGTTACATAAAAGACCCAGAAAACTGTTA
GCTATAAAGACTAATAGTTTTAGAAGACTGCATTACCTGGATAAATAGTGAAGGGAAAGT
GCCTTGAGTAAACATCAATCATTGTAGGGAGAACTGTGATTTTATGATCCAGAATCGTGG
TTATAGTTCTGCTCTGATGGTTTGATATGAATATGGAACTTAGAGGGGAAAAATCTCTAG
GAAAGCACATCCCTCTGTATTATGATTATTGAGAAAATAACTTGAGTTTTTCTGTACTTC
ATCCTTACTTAGCCTAGTCTGTTTTTGCCCTGGCTTTTGTCAGCTCATTGGTTTTAAGTT
TTATTTCCACAGCTCTTGGCCACAGTATTCAGGCTTCTCTAGTTTAGTGGGAGATCTAAC
AAAAAACACCCCCCTCCATTTCCTTCATCCCCTTTAAATATTCATTCTGCAGACATGCTG
TAGGTAATATTTGTATAACATTTTTTAAAAATTTATTTTTGATAGAACCCCTCCCACCCT
CTGCCCCACCTTCCCAAAAGAATCAGAGAAAGGAAAAAGGGGTAGGTAAAAATTTTAAGT
TCATGTCAGTTAAATGGGAAAGCATCTTGATTTTGGAGGATCTCAGAGAAGATTCTTCTA
TACACTGGACAGGTGCTTCTTCTGGCTTGTATTACCAACAGGAGTGACAAAGTTAGAAAT
TGTAACTGGGGGTACGGGGATGGCGGCTGTGCGATCAGGTCACAAAGAAATGTGGTGAGG
ACTGCATGAATAAAATAGGTGCTTTATAAGGATTCGTTAAGAGCTGAATTTATTTGACTT
CAGTTTACAGTGCTGCCTCTCTCCTAGATTTGAAACTAATGCAATAAAATGTACAGATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGAGGCGCCAGATTTAGCGCTGGGCTTAATGGGTTAGTGCAGCCTCCGGGCCACGCA
GGAGCAAGTCGCGCCTGAGCCGGCTTCCAGAGCAGCACGTGGGCTTTTCCTAAGAATGGG
ACTCAGGTAGCAGAGTGGCTTCTGAAGGTTAAGAACACAAACAAGGGCCTGGCCTACGAG
GAACATTTCCCCTTCAGCTGAGAATTTCTAGAAATTCTCATGCTGGGCTAGAGATGGACT
TTCGAAAATAAAAATGACCCTCTTTTCCGTCTTAGTGTTTCCTAGACTTTAGACAGTGAT
TACTTTTGTGCCAAAAAAAAGTACCGTAAGAAGTTACATAAAAGACCCAGAAAACTGTTA
GCTATAAAGACTAATAGTTTTAGAAGACTGCATTACCTGGATAAATAGTGAAGGGAAAGT
GCCTTGAGTAAACATCAATCATTGTAGGGAGAACTGTGATTTTATGATCCAGAATCGTGG
TTATAGTTCTGCTCTGATGGTTTGATATGAATATGGAACTTAGAGGGGAAAAATCTCTAG
GAAAGCACATCCCTCTGTATTATGATTATTGAGAAAATAACTTGAGTTTTTCTGTACTTC
ATCCTTACTTAGCCTAGTCTGTTTTTGCCCTGGCTTTTGTCAGCTCATTGGTTTTAAGTT
TTATTTCCACAGCTCTTGGCCACAGTATTCAGGCTTCTCTAGTTTAGTGGGAGATCTAAC
AAAAAACACCCCCCTCCATTTCCTTCATCCCCTTTAAATATTCATTCTGCAGACATGCTG
TAGGTAATATTTGTATAACATTTTTTAAAAATTTATTTTTGATAGAACCCCTCCCACCCT
CTGCCCCACCTTCCCAAAAGAATCAGAGAAAGGAAAAAGGGGTAGGTAAAAATTTTAAGT
TCATGTCAGTTAAATGGGAAAGCATCTTGATTTTGGAGGATCTCAGAGAAGATTCTTCTA
TACACTGGACAGGTGCTTCTTCTGGCTTGTATTACCAACAGGAGTGACAAAGTTAGAAAT
TGTAACTGGGGGTACGGGGATGGCGGCTGTGCGATCAGGTCACAAAGAAATGTGGTGAGG
ACTGCATGAATAAAATAGGTGCTTTATAAGGATTCGTTAAGAGCTGAATTTATTTGACTT
CAGTTTACAGTGCTGCCTCTCTCCTAGATTTGAAACTAATGCAATAAAATGTACAGATAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               430-544, - strand, RNAz p=0.990869

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               430-544, - strand, RNAz p=0.990869

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               196-656, gnl|bosTau2|chrX (38979256-38979734)
               

               
               196-656, gnl|Hg17|chrX (21433399-21432897)
               

               
               196-656, gnl|Mm7|chrX (152594943-152595451)
               


               
               733-1200, gnl|bosTau2|chrX (38980243-38980712)
               

               
               733-1200, gnl|Hg17|chrX (21432829-21432377)
               

               
               733-1200, gnl|Mm7|chrX (152595480-152595879)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               196-656, gnl|bosTau2|chrX (38979256-38979734)
               

               
               196-656, gnl|Hg17|chrX (21433399-21432897)
               

               
               196-656, gnl|Mm7|chrX (152594943-152595451)
               


               
               733-1200, gnl|bosTau2|chrX (38980243-38980712)
               

               
               733-1200, gnl|Hg17|chrX (21432829-21432377)
               

               
               733-1200, gnl|Mm7|chrX (152595480-152595879)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               vin (0.665115)
               

               
               ste (0.405625)
               

               
               tbr (0.308356)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.665115)
               

               
               ste (0.405625)
               

               
               tbr (0.308356)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	196-656, gnl\|bosTau2\|chrX (38979256-38979734)
	196-656, gnl\|Hg17\|chrX (21433399-21432897)
	196-656, gnl\|Mm7\|chrX (152594943-152595451)

	733-1200, gnl\|bosTau2\|chrX (38980243-38980712)
	733-1200, gnl\|Hg17\|chrX (21432829-21432377)
	733-1200, gnl\|Mm7\|chrX (152595480-152595879)

	vin (0.665115)
	ste (0.405625)
	tbr (0.308356)
	isp (0.150376)
	hyp (0.142837)
	tra (0.123092)
	spc (0.113366)
	ldo (0.0970026)