Ss1.1-rste12_b10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACGCTTAATTAGGTAACAGAACTAGTAATTCAGGTGGTTCACCTCTAGCACAGTTCTAT GGCCTGTTTCCCTAGAGAAAGGTTAGCAATGGCTCCAGTATACCAAATAAGATTCACACG TGAACATGAAAAAACATTTTTTTAAAGCCAGGCCTTTTACCCAGGGACCAACATGCACTG CTCGTGGATGAAATAAATCAATGTTTTACTTCTGGCTTAATGTAATATTGTGAAATACAA TATGGTTGGAGAAAATGGGTATTTGGAAGCCAGTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACGCTTAATTAGGTAACAGAACTAGTAATTCAGGTGGTTCACCTCTAGCACAGTTCTAT GGCCTGTTTCCCTAGAGAAAGGTTAGCAATGGCTCCAGTATACCAAATAAGATTCACACG TGAACATGAAAAAACATTTTTTTAAAGCCAGGCCTTTTACCCAGGGACCAACATGCACTG CTCGTGGATGAAATAAATCAATGTTTTACTTCTGGCTTAATGTAATATTGTGAAATACAA TATGGTTGGAGAAAATGGGTATTTGGAAGCCAGTAT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-119, - strand, RNAz p=0.947658 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-119, - strand, RNAz p=0.947658 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 1-273, gnl|bosTau2|chr11 (23067123-23067399) | |
| 1-273, gnl|canFam2|chr1 (96624856-96625371) | |
| 1-273, gnl|canFam2|chr1 (96624856-96625373) | |
| 1-273, gnl|dasNov1|scaffold_124099 (258-839) | |
| 1-273, gnl|dasNov1|scaffold_124099 (258-841) | |
| 1-273, gnl|echTel1|scaffold_320111 (44457-44988) | |
| 1-273, gnl|echTel1|scaffold_320111 (44457-44992) | |
| 1-273, gnl|Hg17|chr2 (46721235-46720961) | |
| 1-273, gnl|hg17|chr9 (5391348-5391947) | |
| 1-273, gnl|hg17|chr9 (5315390-5315988) | |
| 1-273, gnl|loxAfr1|scaffold_21887 (14517-13963) | |
| 1-273, gnl|loxAfr1|scaffold_21887 (14517-13964) | |
| 1-273, gnl|mm7|chr17 (85300909-85300401) | |
| 1-273, gnl|mm7|chr17 (85300909-85300369) | |
| 1-273, gnl|Mm7|chr17 (85300828-85300582) | |
| 1-273, gnl|oryCun1|scaffold_173923 (162021-161512) | |
| 1-273, gnl|oryCun1|scaffold_173923 (162021-161502) | |
| 1-273, gnl|panTro1|chr11 (5319510-5320113) | |
| 1-273, gnl|panTro1|chr11 (5256993-5257592) | |
| 1-273, gnl|rheMac2|chr15 (71754581-71753981) | |
| 1-273, gnl|rheMac2|chr15 (71816461-71815866) | |
| 1-273, gnl|rn3|chr1 (107238918-107238446) | |
| 1-273, gnl|rn3|chr1 (107238918-107238423) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-273, gnl|bosTau2|chr11 (23067123-23067399) | |
| 1-273, gnl|canFam2|chr1 (96624856-96625371) | |
| 1-273, gnl|canFam2|chr1 (96624856-96625373) | |
| 1-273, gnl|dasNov1|scaffold_124099 (258-839) | |
| 1-273, gnl|dasNov1|scaffold_124099 (258-841) | |
| 1-273, gnl|echTel1|scaffold_320111 (44457-44988) | |
| 1-273, gnl|echTel1|scaffold_320111 (44457-44992) | |
| 1-273, gnl|Hg17|chr2 (46721235-46720961) | |
| 1-273, gnl|hg17|chr9 (5391348-5391947) | |
| 1-273, gnl|hg17|chr9 (5315390-5315988) | |
| 1-273, gnl|loxAfr1|scaffold_21887 (14517-13963) | |
| 1-273, gnl|loxAfr1|scaffold_21887 (14517-13964) | |
| 1-273, gnl|mm7|chr17 (85300909-85300401) | |
| 1-273, gnl|mm7|chr17 (85300909-85300369) | |
| 1-273, gnl|Mm7|chr17 (85300828-85300582) | |
| 1-273, gnl|oryCun1|scaffold_173923 (162021-161512) | |
| 1-273, gnl|oryCun1|scaffold_173923 (162021-161502) | |
| 1-273, gnl|panTro1|chr11 (5319510-5320113) | |
| 1-273, gnl|panTro1|chr11 (5256993-5257592) | |
| 1-273, gnl|rheMac2|chr15 (71754581-71753981) | |
| 1-273, gnl|rheMac2|chr15 (71816461-71815866) | |
| 1-273, gnl|rn3|chr1 (107238918-107238446) | |
| 1-273, gnl|rn3|chr1 (107238918-107238423) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| ste (0.135208) | |
| kid (0.129735) |