Ss1.1-rste14_c20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGTCCTGGCCCCTTACAAGAGAGATCTCTCTTTGAGAAAAAGAGGGGCGCTCCTCCAA GTAGCAATATTGAAGACTTCCATGGACTCTTACCGAAGGGTTATCCCCATCTGTGCTCTA TATGTGATTTGCCAGTTCATTCTAATAAGGAGTGGAGTCAACATATCAATGGAGCAAGTC ACAGTCGTCGATGCCAGCTTCTTCTTGAAATCTACCCAGAATGGAATCCTGACAATGATA CGGGACACACAATGGGTGATCCATTCATGTTGCAGCAATCTACAAATCCAGCACCAGGAA TTCTGGGACCTCCACCTCCCTCTTTTCATCTTGGGGGACCAGCAGTTGGACCAAGAGGAA ATCTGGGACTGAAAAATATACTTTTTCCTCATAAAGGTGCTGGAAATGGAAACCTGCAAG GACCAAGACACATGCAAAAAGGCAGAGTGGAAACTAGCCGAGTTGTTCACATCATGGATT TCCAGCGAGGGAAAAACTTGAGATACCAACTATTACAGCTGGTGGAACCATTTGGAGTTA TTTCAAATCATCTGATTCTAAATAAAATTAATGAGGCGTTCATTGAAATGGCAACCACAG AAGATGCTCAGGCTGCAGTGGATTATTATACAACCACACCAGCATTAGTATTTGGCAAGC CAGTGAGAGTTCATTTATCCCAGAAGTATAAAAGAATAAAGAAACCTGAAGGGAAGCCAG ACCAGAAGTTTGATCAAAAGCAAGAGCTTGGACGTGTGATACATCTCAGCAATTTACCTC ATTCTGGCTATTCTGACAGTGCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGTCCTGGCCCCTTACAAGAGAGATCTCTCTTTGAGAAAAAGAGGGGCGCTCCTCCAA GTAGCAATATTGAAGACTTCCATGGACTCTTACCGAAGGGTTATCCCCATCTGTGCTCTA TATGTGATTTGCCAGTTCATTCTAATAAGGAGTGGAGTCAACATATCAATGGAGCAAGTC ACAGTCGTCGATGCCAGCTTCTTCTTGAAATCTACCCAGAATGGAATCCTGACAATGATA CGGGACACACAATGGGTGATCCATTCATGTTGCAGCAATCTACAAATCCAGCACCAGGAA TTCTGGGACCTCCACCTCCCTCTTTTCATCTTGGGGGACCAGCAGTTGGACCAAGAGGAA ATCTGGGACTGAAAAATATACTTTTTCCTCATAAAGGTGCTGGAAATGGAAACCTGCAAG GACCAAGACACATGCAAAAAGGCAGAGTGGAAACTAGCCGAGTTGTTCACATCATGGATT TCCAGCGAGGGAAAAACTTGAGATACCAACTATTACAGCTGGTGGAACCATTTGGAGTTA TTTCAAATCATCTGATTCTAAATAAAATTAATGAGGCGTTCATTGAAATGGCAACCACAG AAGATGCTCAGGCTGCAGTGGATTATTATACAACCACACCAGCATTAGTATTTGGCAAGC CAGTGAGAGTTCATTTATCCCAGAAGTATAAAAGAATAAAGAAACCTGAAGGGAAGCCAG ACCAGAAGTTTGATCAAAAGCAAGAGCTTGGACGTGTGATACATCTCAGCAATTTACCTC ATTCTGGCTATTCTGACAGTGCTG |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 1-166, gnl|bosTau2|chr7 (37233712-37233879) | |
| 1-166, gnl|canFam2|chr11 (29791465-29791612) | |
| 1-166, gnl|canFam2|chr11 (29791082-29791612) | |
| 1-166, gnl|danRer3|chr14 (24811342-24810857) | |
| 1-166, gnl|dasNov1|scaffold_14365 (7517-7370) | |
| 1-166, gnl|dasNov1|scaffold_14365 (7900-7370) | |
| 1-166, gnl|echTel1|scaffold_243407 (1148-1006) | |
| 1-166, gnl|echTel1|scaffold_243407 (1536-1006) | |
| 1-166, gnl|fr1|chrUn (282469634-282469137) | |
| 1-166, gnl|galGal2|chr13 (7069270-7069405) | |
| 1-166, gnl|galGal2|chr13 (7068893-7069405) | |
| 1-166, gnl|hg17|chr1 (106147175-106147322) | |
| 1-166, gnl|hg17|chr5 (138671384-138671914) | |
| 1-166, gnl|Hg17|chr5 (138671767-138671934) | |
| 1-166, gnl|loxAfr1|scaffold_10615 (36968-37498) | |
| 1-166, gnl|loxAfr1|scaffold_488 (121830-121977) | |
| 1-166, gnl|mm7|chr18 (35948888-35949035) | |
| 1-166, gnl|mm7|chr18 (35948505-35949035) | |
| 1-166, gnl|Mm7|chr18 (35948888-35949055) | |
| 1-166, gnl|monDom2|scaffold_6 (69769534-69769387) | |
| 1-166, gnl|monDom2|scaffold_6 (69769917-69769387) | |
| 1-166, gnl|oryCun1|scaffold_132933 (387-534) | |
| 1-166, gnl|oryCun1|scaffold_132933 (4-534) | |
| 1-166, gnl|panTro1|chr1_random (3089537-3089390) | |
| 1-166, gnl|panTro1|chr4 (145273324-145273854) | |
| 1-166, gnl|rheMac2|chr1 (108757959-108758106) | |
| 1-166, gnl|rheMac2|chr6 (135723828-135724358) | |
| 1-166, gnl|rn3|chr1 (119617332-119617479) | |
| 1-166, gnl|rn3|chr18 (28223062-28223592) | |
| 1-166, gnl|xenTro1|scaffold_15 (402400-402270) | |
| 1-166, gnl|xenTro1|scaffold_15 (402773-402270) | |
| 445-576, gnl|bosTau2|chr7 (37240524-37240656) | |
| 445-576, gnl|Hg17|chr5 (138681178-138681310) | |
| 445-576, gnl|Mm7|chr18 (35957265-35957397) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-166, gnl|bosTau2|chr7 (37233712-37233879) | |
| 1-166, gnl|canFam2|chr11 (29791465-29791612) | |
| 1-166, gnl|canFam2|chr11 (29791082-29791612) | |
| 1-166, gnl|danRer3|chr14 (24811342-24810857) | |
| 1-166, gnl|dasNov1|scaffold_14365 (7517-7370) | |
| 1-166, gnl|dasNov1|scaffold_14365 (7900-7370) | |
| 1-166, gnl|echTel1|scaffold_243407 (1148-1006) | |
| 1-166, gnl|echTel1|scaffold_243407 (1536-1006) | |
| 1-166, gnl|fr1|chrUn (282469634-282469137) | |
| 1-166, gnl|galGal2|chr13 (7069270-7069405) | |
| 1-166, gnl|galGal2|chr13 (7068893-7069405) | |
| 1-166, gnl|hg17|chr1 (106147175-106147322) | |
| 1-166, gnl|hg17|chr5 (138671384-138671914) | |
| 1-166, gnl|Hg17|chr5 (138671767-138671934) | |
| 1-166, gnl|loxAfr1|scaffold_10615 (36968-37498) | |
| 1-166, gnl|loxAfr1|scaffold_488 (121830-121977) | |
| 1-166, gnl|mm7|chr18 (35948888-35949035) | |
| 1-166, gnl|mm7|chr18 (35948505-35949035) | |
| 1-166, gnl|Mm7|chr18 (35948888-35949055) | |
| 1-166, gnl|monDom2|scaffold_6 (69769534-69769387) | |
| 1-166, gnl|monDom2|scaffold_6 (69769917-69769387) | |
| 1-166, gnl|oryCun1|scaffold_132933 (387-534) | |
| 1-166, gnl|oryCun1|scaffold_132933 (4-534) | |
| 1-166, gnl|panTro1|chr1_random (3089537-3089390) | |
| 1-166, gnl|panTro1|chr4 (145273324-145273854) | |
| 1-166, gnl|rheMac2|chr1 (108757959-108758106) | |
| 1-166, gnl|rheMac2|chr6 (135723828-135724358) | |
| 1-166, gnl|rn3|chr1 (119617332-119617479) | |
| 1-166, gnl|rn3|chr18 (28223062-28223592) | |
| 1-166, gnl|xenTro1|scaffold_15 (402400-402270) | |
| 1-166, gnl|xenTro1|scaffold_15 (402773-402270) | |
| 445-576, gnl|bosTau2|chr7 (37240524-37240656) | |
| 445-576, gnl|Hg17|chr5 (138681178-138681310) | |
| 445-576, gnl|Mm7|chr18 (35957265-35957397) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| ste (0.135208) | |
| ecc (0.115035) |