Ss1.1-rste14_p18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATTTGCTGTGGAACTGGCAGATCCAAAATTGGAGGTGAAATGGTATAAAAATGGTCAAG AAATTCGACCCAGTACAAAATACATCTTTGAACATAAAGGATGTGAAAGAATCATGTTTA TCAATAACTGTGGGCTAACAGATGATTCAGAGTATTATGTGACAGCTGGTGATGAGAAAT GTTCCACTGAGCTCTTTGTAAGAGAGCCTCCAGTTATGGTGACCAAACAGCTGGAAGATA CAAAAGCTTACTGTGGAGAGAGAGTGGAATTAGAATGTGAGGTGTCTGAAGATGATGCCA ACGTAAAATGGTTTAAGAATGGTGAGGAAATTATCCCTGGTCCAAAATCAAGATACCGAA TTAAAGTTGATGGCAAGAAACACATCTTGATCATAGAAGGAGCAACAAAGGCTGATACTG CAGAATATTCTGTAATGACAACAGGAGGACAGTCATCTGCTAAACTTAGTGTTGACTTAA AACCTCTGAAGATATTGACACCTCTGACTGATCAGACTGTAAACCTTGGAAAAGAAATCT GCTTGAAATGTGAAATCTCTGAAAACATATCAGGAAAATGGACTAAAAATAGTCTACCTG TTCAGGAGACTGACCGTCTAAAGATTATTCACAAAGGAAGGATCCACAAATTGGTGATAG CCAATGCTCTCACTGAGGATGAAGGTGATTATGTATTTGCACCAGATGCCTACTCTGTTA CTTTGCCTGCCAAAGTTCATGTCATTGATCCTCCTAGGATTAACCTGGATGGTCTCGGTC CTGACAATACAGTGACAGTAATGGCAGGAAACAAACTTCGTCTAGAGATTCCCATCAGTG GAGAACCACCTCCTAAAGTCATCTGGAGCCGAGCAGACAAGGCTATTATGGAGGGCAGCG GCCGGATAAGAGCCGAATCTTACCCTGATAGCAGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATTTGCTGTGGAACTGGCAGATCCAAAATTGGAGGTGAAATGGTATAAAAATGGTCAAG AAATTCGACCCAGTACAAAATACATCTTTGAACATAAAGGATGTGAAAGAATCATGTTTA TCAATAACTGTGGGCTAACAGATGATTCAGAGTATTATGTGACAGCTGGTGATGAGAAAT GTTCCACTGAGCTCTTTGTAAGAGAGCCTCCAGTTATGGTGACCAAACAGCTGGAAGATA CAAAAGCTTACTGTGGAGAGAGAGTGGAATTAGAATGTGAGGTGTCTGAAGATGATGCCA ACGTAAAATGGTTTAAGAATGGTGAGGAAATTATCCCTGGTCCAAAATCAAGATACCGAA TTAAAGTTGATGGCAAGAAACACATCTTGATCATAGAAGGAGCAACAAAGGCTGATACTG CAGAATATTCTGTAATGACAACAGGAGGACAGTCATCTGCTAAACTTAGTGTTGACTTAA AACCTCTGAAGATATTGACACCTCTGACTGATCAGACTGTAAACCTTGGAAAAGAAATCT GCTTGAAATGTGAAATCTCTGAAAACATATCAGGAAAATGGACTAAAAATAGTCTACCTG TTCAGGAGACTGACCGTCTAAAGATTATTCACAAAGGAAGGATCCACAAATTGGTGATAG CCAATGCTCTCACTGAGGATGAAGGTGATTATGTATTTGCACCAGATGCCTACTCTGTTA CTTTGCCTGCCAAAGTTCATGTCATTGATCCTCCTAGGATTAACCTGGATGGTCTCGGTC CTGACAATACAGTGACAGTAATGGCAGGAAACAAACTTCGTCTAGAGATTCCCATCAGTG GAGAACCACCTCCTAAAGTCATCTGGAGCCGAGCAGACAAGGCTATTATGGAGGGCAGCG GCCGGATAAGAGCCGAATCTTACCCTGATAGCAGCA |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 80-204, gnl|bosTau2|chr5 (39807784-39807908) | |
| 80-204, gnl|canFam2|chr15 (43562215-43562345) | |
| 80-204, gnl|danRer3|chr4 (19146419-19146289) | |
| 80-204, gnl|dasNov1|scaffold_8886 (968-1098) | |
| 80-204, gnl|echTel1|scaffold_293231 (39040-39170) | |
| 80-204, gnl|fr1|chrUn (212011584-212011714) | |
| 80-204, gnl|galGal2|chr1 (52322665-52322535) | |
| 80-204, gnl|hg17|chr12 (100543007-100543137) | |
| 80-204, gnl|Hg17|chr12 (100543009-100543133) | |
| 80-204, gnl|loxAfr1|scaffold_604 (139233-139363) | |
| 80-204, gnl|mm7|chr10 (88113210-88113080) | |
| 80-204, gnl|Mm7|chr10 (88113206-88113082) | |
| 80-204, gnl|monDom2|scaffold_34 (11731512-11731382) | |
| 80-204, gnl|oryCun1|scaffold_158046 (436-566) | |
| 80-204, gnl|panTro1|chr10 (102998654-102998784) | |
| 80-204, gnl|rheMac2|chr11 (102837294-102837424) | |
| 80-204, gnl|rn3|chr7 (25271984-25271854) | |
| 80-204, gnl|tetNig1|chr19 (1604219-1604349) | |
| 80-204, gnl|xenTro1|scaffold_230 (333311-333181) | |
| 310-477, gnl|bosTau2|chr5 (39810763-39810930) | |
| 310-477, gnl|canFam2|chr15 (43564465-43564663) | |
| 310-477, gnl|danRer3|chr4 (19144111-19143908) | |
| 310-477, gnl|dasNov1|scaffold_8886 (3026-3232) | |
| 310-477, gnl|echTel1|scaffold_293231 (41719-41914) | |
| 310-477, gnl|fr1|chrUn (212012069-212012246) | |
| 310-477, gnl|galGal2|chr1 (52321571-52321381) | |
| 310-477, gnl|hg17|chr12 (100545499-100545697) | |
| 310-477, gnl|Hg17|chr12 (100545505-100545672) | |
| 310-477, gnl|loxAfr1|scaffold_604 (142164-142362) | |
| 310-477, gnl|mm7|chr10 (88110897-88110699) | |
| 310-477, gnl|Mm7|chr10 (88110889-88110722) | |
| 310-477, gnl|monDom2|scaffold_34 (11726686-11726497) | |
| 310-477, gnl|oryCun1|scaffold_203776 (156990-157188) | |
| 310-477, gnl|panTro1|chr10 (103001140-103001338) | |
| 310-477, gnl|rheMac2|chr11 (102839656-102839854) | |
| 310-477, gnl|rn3|chr7 (25269646-25269448) | |
| 310-477, gnl|tetNig1|chr19 (1604647-1604825) | |
| 310-477, gnl|xenTro1|scaffold_230 (331924-331731) | |
| 478-641, gnl|bosTau2|chr5 (39979563-39979400) | |
| 478-641, gnl|Hg17|chr12 (100547477-100547640) | |
| 478-641, gnl|Mm7|chr10 (88109022-88108859) | |
| 729-882, gnl|bosTau2|chr5 (39977883-39977730) | |
| 729-882, gnl|canFam2|chr15 (43567614-43567789) | |
| 729-882, gnl|danRer3|chr4 (19142387-19142220) | |
| 729-882, gnl|dasNov1|scaffold_8886 (6556-6729) | |
| 729-882, gnl|echTel1|scaffold_222336 (5384-5559) | |
| 729-882, gnl|fr1|chrUn (212012710-212012883) | |
| 729-882, gnl|galGal2|chr1 (52318632-52318461) | |
| 729-882, gnl|hg17|chr12 (100549334-100549509) | |
| 729-882, gnl|Hg17|chr12 (100549342-100549495) | |
| 729-882, gnl|loxAfr1|scaffold_604 (145792-145966) | |
| 729-882, gnl|mm7|chr10 (88106396-88106223) | |
| 729-882, gnl|Mm7|chr10 (88106386-88106233) | |
| 729-882, gnl|monDom2|scaffold_34 (11718827-11718653) | |
| 729-882, gnl|oryCun1|scaffold_203776 (161410-161589) | |
| 729-882, gnl|panTro1|chr10 (103004977-103005152) | |
| 729-882, gnl|rheMac2|chr11 (102843482-102843657) | |
| 729-882, gnl|rn3|chr7 (25264593-25264420) | |
| 729-882, gnl|tetNig1|chr19 (1605308-1605460) | |
| 729-882, gnl|xenTro1|scaffold_230 (327920-327754) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 80-204, gnl|bosTau2|chr5 (39807784-39807908) | |
| 80-204, gnl|canFam2|chr15 (43562215-43562345) | |
| 80-204, gnl|danRer3|chr4 (19146419-19146289) | |
| 80-204, gnl|dasNov1|scaffold_8886 (968-1098) | |
| 80-204, gnl|echTel1|scaffold_293231 (39040-39170) | |
| 80-204, gnl|fr1|chrUn (212011584-212011714) | |
| 80-204, gnl|galGal2|chr1 (52322665-52322535) | |
| 80-204, gnl|hg17|chr12 (100543007-100543137) | |
| 80-204, gnl|Hg17|chr12 (100543009-100543133) | |
| 80-204, gnl|loxAfr1|scaffold_604 (139233-139363) | |
| 80-204, gnl|mm7|chr10 (88113210-88113080) | |
| 80-204, gnl|Mm7|chr10 (88113206-88113082) | |
| 80-204, gnl|monDom2|scaffold_34 (11731512-11731382) | |
| 80-204, gnl|oryCun1|scaffold_158046 (436-566) | |
| 80-204, gnl|panTro1|chr10 (102998654-102998784) | |
| 80-204, gnl|rheMac2|chr11 (102837294-102837424) | |
| 80-204, gnl|rn3|chr7 (25271984-25271854) | |
| 80-204, gnl|tetNig1|chr19 (1604219-1604349) | |
| 80-204, gnl|xenTro1|scaffold_230 (333311-333181) | |
| 310-477, gnl|bosTau2|chr5 (39810763-39810930) | |
| 310-477, gnl|canFam2|chr15 (43564465-43564663) | |
| 310-477, gnl|danRer3|chr4 (19144111-19143908) | |
| 310-477, gnl|dasNov1|scaffold_8886 (3026-3232) | |
| 310-477, gnl|echTel1|scaffold_293231 (41719-41914) | |
| 310-477, gnl|fr1|chrUn (212012069-212012246) | |
| 310-477, gnl|galGal2|chr1 (52321571-52321381) | |
| 310-477, gnl|hg17|chr12 (100545499-100545697) | |
| 310-477, gnl|Hg17|chr12 (100545505-100545672) | |
| 310-477, gnl|loxAfr1|scaffold_604 (142164-142362) | |
| 310-477, gnl|mm7|chr10 (88110897-88110699) | |
| 310-477, gnl|Mm7|chr10 (88110889-88110722) | |
| 310-477, gnl|monDom2|scaffold_34 (11726686-11726497) | |
| 310-477, gnl|oryCun1|scaffold_203776 (156990-157188) | |
| 310-477, gnl|panTro1|chr10 (103001140-103001338) | |
| 310-477, gnl|rheMac2|chr11 (102839656-102839854) | |
| 310-477, gnl|rn3|chr7 (25269646-25269448) | |
| 310-477, gnl|tetNig1|chr19 (1604647-1604825) | |
| 310-477, gnl|xenTro1|scaffold_230 (331924-331731) | |
| 478-641, gnl|bosTau2|chr5 (39979563-39979400) | |
| 478-641, gnl|Hg17|chr12 (100547477-100547640) | |
| 478-641, gnl|Mm7|chr10 (88109022-88108859) | |
| 729-882, gnl|bosTau2|chr5 (39977883-39977730) | |
| 729-882, gnl|canFam2|chr15 (43567614-43567789) | |
| 729-882, gnl|danRer3|chr4 (19142387-19142220) | |
| 729-882, gnl|dasNov1|scaffold_8886 (6556-6729) | |
| 729-882, gnl|echTel1|scaffold_222336 (5384-5559) | |
| 729-882, gnl|fr1|chrUn (212012710-212012883) | |
| 729-882, gnl|galGal2|chr1 (52318632-52318461) | |
| 729-882, gnl|hg17|chr12 (100549334-100549509) | |
| 729-882, gnl|Hg17|chr12 (100549342-100549495) | |
| 729-882, gnl|loxAfr1|scaffold_604 (145792-145966) | |
| 729-882, gnl|mm7|chr10 (88106396-88106223) | |
| 729-882, gnl|Mm7|chr10 (88106386-88106233) | |
| 729-882, gnl|monDom2|scaffold_34 (11718827-11718653) | |
| 729-882, gnl|oryCun1|scaffold_203776 (161410-161589) | |
| 729-882, gnl|panTro1|chr10 (103004977-103005152) | |
| 729-882, gnl|rheMac2|chr11 (102843482-102843657) | |
| 729-882, gnl|rn3|chr7 (25264593-25264420) | |
| 729-882, gnl|tetNig1|chr19 (1605308-1605460) | |
| 729-882, gnl|xenTro1|scaffold_230 (327920-327754) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| ste (0.405625) | |
| fty (0.17584) | |
| ton (0.1755) | |
| ese (0.126502) | |
| eru (0.120048) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ste (0.405625) | |
| fty (0.17584) | |
| ton (0.1755) | |
| ese (0.126502) | |
| eru (0.120048) |