Non-Coding RNA Search

Ss1.1-rste16_k15.5

Sequence:


               
               AGTTCACTCTTGATTGCACGCACCCAGTGGAAGATGGAATCATGGATGCGGCCCATTTTG
AACAGTTTCTTCAGGAAAGAATCCAAGTGAATGGGAAAGCTGGAAACCTCGGAGGAGGGG
TTGTAACCATCGAGAGAAGCCAAAGCCAGATCACTGTAACTTCCGAGGTGCCTTTTTCCC
AAAGGTATTTGAAATATCTCACCCAAAAGTATTTGAAGAAGAATAACCTACGTGACTGGT
TACGTGTCGTTGCTAACAGCCAAGAGAGCTATGAATTACGCTACTTCCAGATTAATCAGG
ATGAAGAGGAGGAGGAAGATGAGGATTGAAATTCCTTTATCTGTAACCTTTTGTATGAGT
TCTTGAATAAAAGTAAGGAATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTCACTCTTGATTGCACGCACCCAGTGGAAGATGGAATCATGGATGCGGCCCATTTTG
AACAGTTTCTTCAGGAAAGAATCCAAGTGAATGGGAAAGCTGGAAACCTCGGAGGAGGGG
TTGTAACCATCGAGAGAAGCCAAAGCCAGATCACTGTAACTTCCGAGGTGCCTTTTTCCC
AAAGGTATTTGAAATATCTCACCCAAAAGTATTTGAAGAAGAATAACCTACGTGACTGGT
TACGTGTCGTTGCTAACAGCCAAGAGAGCTATGAATTACGCTACTTCCAGATTAATCAGG
ATGAAGAGGAGGAGGAAGATGAGGATTGAAATTCCTTTATCTGTAACCTTTTGTATGAGT
TCTTGAATAAAAGTAAGGAATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47522800|ref|NP_999152.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47522800|ref|NP_999152.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-325, gnl|bosTau2|chr10 (30452517-30452196)
               

               
               1-325, gnl|Hg17|chr3 (172068847-172066875)
               

               
               1-325, gnl|Mm7|chr5 (21566535-21566214)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-325, gnl|bosTau2|chr10 (30452517-30452196)
               

               
               1-325, gnl|Hg17|chr3 (172068847-172066875)
               

               
               1-325, gnl|Mm7|chr5 (21566535-21566214)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nms (0.427716)
               

               
               mcp (0.170648)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               mcp (0.170648)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)

	1-325, gnl\|bosTau2\|chr10 (30452517-30452196)
	1-325, gnl\|Hg17\|chr3 (172068847-172066875)
	1-325, gnl\|Mm7\|chr5 (21566535-21566214)