Non-Coding RNA Search

Ss1.1-rste17_f11.5

Sequence:


               
               ATAAACAGAAGGTATTTATTTACTTTGGTTTCGACTGCATCTATATAAGAAGGCAGTTTC
CAAAACTTAAGGGCAATGTATTTATTTATTCAACAAATTCTATTATATTTATAGCTGTAC
AACCATCATCACAACCTAAATTTAGAACACTTCCACCCCAAATGCCAGGTAAGGGCAAAG
TTTTCATATTCGGTTTTCCTGTTCTCCCAAGGATCATATTCAATTTTGGCTTTGAAGGCA
CTTTCGGTAGTCTATTTAGGTATTACCTTGAATCTACCACAGTTAAAATTATTTAGAACA
CCTTACAGGAGATTTCATCTCTATGAGGAACATTTTTCAGAGAGGAAATTGTTGCAGCAC
TGAACTGCCAAAGAGACAGCTGAAAAAAATGGGTCATGCATTCACCTCATTCTGGGACGT
AAGCTGCCAAGCGGTTCACTGCTCATTTTTGTCCTCTTCCCATAAACAAGCTGCGTTAAC
AAGTTACTTTAAAAAAGCATACTAATTTCCCCAGTGAGTTACACAGGAAAGAATTCAGCG
CTCCCTCCAGAGAACTCAAAGAGTTGTTTGTTCTCAGAGCTCAGGTGTGGTAAGAGAGCT
GCGGGCTAAAAATGCTCGCTGGATATTGGCCAGTAGGCTAGTACCTTCCCTCTGCTCCAC
CCTGCTCTTTCTCGCACTTGGTGTGCAACTCGTAGCTTGCTTCATGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAACAGAAGGTATTTATTTACTTTGGTTTCGACTGCATCTATATAAGAAGGCAGTTTC
CAAAACTTAAGGGCAATGTATTTATTTATTCAACAAATTCTATTATATTTATAGCTGTAC
AACCATCATCACAACCTAAATTTAGAACACTTCCACCCCAAATGCCAGGTAAGGGCAAAG
TTTTCATATTCGGTTTTCCTGTTCTCCCAAGGATCATATTCAATTTTGGCTTTGAAGGCA
CTTTCGGTAGTCTATTTAGGTATTACCTTGAATCTACCACAGTTAAAATTATTTAGAACA
CCTTACAGGAGATTTCATCTCTATGAGGAACATTTTTCAGAGAGGAAATTGTTGCAGCAC
TGAACTGCCAAAGAGACAGCTGAAAAAAATGGGTCATGCATTCACCTCATTCTGGGACGT
AAGCTGCCAAGCGGTTCACTGCTCATTTTTGTCCTCTTCCCATAAACAAGCTGCGTTAAC
AAGTTACTTTAAAAAAGCATACTAATTTCCCCAGTGAGTTACACAGGAAAGAATTCAGCG
CTCCCTCCAGAGAACTCAAAGAGTTGTTTGTTCTCAGAGCTCAGGTGTGGTAAGAGAGCT
GCGGGCTAAAAATGCTCGCTGGATATTGGCCAGTAGGCTAGTACCTTCCCTCTGCTCCAC
CCTGCTCTTTCTCGCACTTGGTGTGCAACTCGTAGCTTGCTTCATGGA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               196-707, gnl|bosTau2|chr24 (22079969-22080478)
               

               
               196-707, gnl|Hg17|chr18 (22775414-22775920)
               

               
               196-707, gnl|Mm7|chr18 (15839030-15839535)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               196-707, gnl|bosTau2|chr24 (22079969-22080478)
               

               
               196-707, gnl|Hg17|chr18 (22775414-22775920)
               

               
               196-707, gnl|Mm7|chr18 (15839030-15839535)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ste (0.135208)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.135208)
               

               
               spc (0.113366)

	196-707, gnl\|bosTau2\|chr24 (22079969-22080478)
	196-707, gnl\|Hg17\|chr18 (22775414-22775920)
	196-707, gnl\|Mm7\|chr18 (15839030-15839535)