Non-Coding RNA Search

Ss1.1-rste17_k4.5

Sequence:


               
               CTGTCAAAAAGTTTGTTTCCAGATTGGGAATCAAGACATGGAAACAAAGAATTATCAGTG
AAAGAGGATATTTATGATGAAGATTCACCCCAAATGGTAATAATGGAAAAAACTATAAAA
CAAAGACATGAATTTTCAAATTTTAACAGGGACTTGGATTATATAGAGAAGTTGGAGGGG
AAGCATGAAAATCAGGTAGAACATTTCAGACCAGTGACCCTCACCTTTAGAGGAAGTCCC
ACTGGGGAAAGTGCTTACAAATGCAATACATTTAGAAGCATCTTCCATTTAAAGTCTATT
CTTTCTGAACCACAGAGAATTTCTGCTGAAGGGATGTCACATAAACATGATATATTTAAG
AAGAGCTCACCAACGATTTCAGTTATAAAAAGTGAGAGTATCAATAGTGGAAAGAAACTT
TTGAATTCCAGTCAAAGTGCGGGAGCCTTCAGCCAAAGCAAATCTCTTACGCTTCACCAG
ACTTATAATAGAGAGAAAATCTATACATGTAGTGAATGTGGGAAAGCCTTTGGCAAGCAG
TCAATCCTTAATCGCCACTGGAGAATTCATACAGGAGAGAAACCCTATGAATGTCATGAA
TGTGGGAAGACTTTTAGCCATGGCTCATCCCTTACTCGACATCAAATAAGTCACAGTGGA
GAGAAACCTTACAAATGTATCGAATGTGGGAAGGCCTTTAGCCATGTCTCATCACTTACT
AATCATCAAAGCACTCACACTGGAGAGAAACCATATGAATGTATGAATTGCAGAAAGGCT
TTTAGTCGTGTTTCACATCTCATTGAACATCTGAGAATTCATACTCAAGAAAAACTCTAT
GAATGTCGAATATGTGGGAAGGCCTTCATTCACAGGTCATCTCTCATT------------
------------GAGAAACCTTATGAATGTAGTGAATGTGGAAAAGCCTTTTGCTGTAGT
TCACACCTTACTAGACATCAAAGAATTCATGCTATAGAGAAACAATTTGAATGCAACAAA
TGTCTGAAAGTCTTTAGCAGCCTTTCATTTCTTACTCAGCATCAGAGTATTCATACTGAA
GAAAAACCTTTTGAATGTCAAAAATGCAGGAAATCCTTCAACCAGCCTGAATCACTGAAT
ATGCATTTGAGAAATCACACTAGATTGAAACCTTATGAATGCAGTATATGTGGGAAAGCC
TTCACTCATAGGTCATCTCTCCTT------------------------------------
------------------------------------------------------------
------------------------------------------------------------
TCAAATCTTACTGCCCATCAGAGAGTACATAATGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTCAAAAAGTTTGTTTCCAGATTGGGAATCAAGACATGGAAACAAAGAATTATCAGTG
AAAGAGGATATTTATGATGAAGATTCACCCCAAATGGTAATAATGGAAAAAACTATAAAA
CAAAGACATGAATTTTCAAATTTTAACAGGGACTTGGATTATATAGAGAAGTTGGAGGGG
AAGCATGAAAATCAGGTAGAACATTTCAGACCAGTGACCCTCACCTTTAGAGGAAGTCCC
ACTGGGGAAAGTGCTTACAAATGCAATACATTTAGAAGCATCTTCCATTTAAAGTCTATT
CTTTCTGAACCACAGAGAATTTCTGCTGAAGGGATGTCACATAAACATGATATATTTAAG
AAGAGCTCACCAACGATTTCAGTTATAAAAAGTGAGAGTATCAATAGTGGAAAGAAACTT
TTGAATTCCAGTCAAAGTGCGGGAGCCTTCAGCCAAAGCAAATCTCTTACGCTTCACCAG
ACTTATAATAGAGAGAAAATCTATACATGTAGTGAATGTGGGAAAGCCTTTGGCAAGCAG
TCAATCCTTAATCGCCACTGGAGAATTCATACAGGAGAGAAACCCTATGAATGTCATGAA
TGTGGGAAGACTTTTAGCCATGGCTCATCCCTTACTCGACATCAAATAAGTCACAGTGGA
GAGAAACCTTACAAATGTATCGAATGTGGGAAGGCCTTTAGCCATGTCTCATCACTTACT
AATCATCAAAGCACTCACACTGGAGAGAAACCATATGAATGTATGAATTGCAGAAAGGCT
TTTAGTCGTGTTTCACATCTCATTGAACATCTGAGAATTCATACTCAAGAAAAACTCTAT
GAATGTCGAATATGTGGGAAGGCCTTCATTCACAGGTCATCTCTCATT------------
------------GAGAAACCTTATGAATGTAGTGAATGTGGAAAAGCCTTTTGCTGTAGT
TCACACCTTACTAGACATCAAAGAATTCATGCTATAGAGAAACAATTTGAATGCAACAAA
TGTCTGAAAGTCTTTAGCAGCCTTTCATTTCTTACTCAGCATCAGAGTATTCATACTGAA
GAAAAACCTTTTGAATGTCAAAAATGCAGGAAATCCTTCAACCAGCCTGAATCACTGAAT
ATGCATTTGAGAAATCACACTAGATTGAAACCTTATGAATGCAGTATATGTGGGAAAGCC
TTCACTCATAGGTCATCTCTCCTT------------------------------------
------------------------------------------------------------
------------------------------------------------------------
TCAAATCTTACTGCCCATCAGAGAGTACATAATGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61826531|ref|XP_591803.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61826531|ref|XP_591803.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               499-616, - strand, RNAz p=0.566365

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               499-616, - strand, RNAz p=0.566365

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               221-1200, gnl|bosTau2|chr18 (40324486-40323501)
               


               
               234-1196, gnl|bosTau2|chr18 (44154293-44153320)
               

               
               234-1196, gnl|Mm7|chr7 (24898383-24897391)
               


               
               383-1183, gnl|bosTau2|chr14 (25783569-25784396)
               

               
               383-1183, gnl|Hg17|chr19 (49043426-49044253)
               

               
               383-1183, gnl|Mm7|chr7 (24898315-24897488)
               


               
               388-1180, gnl|bosTau2|chr14 (25783742-25784561)
               

               
               388-1180, gnl|Hg17|chr19 (49043599-49044418)
               

               
               388-1180, gnl|Mm7|chr7 (24898142-24897323)
               


               
               404-1012, gnl|bosTau2|chr10 (8996518-8995893)
               

               
               404-1012, gnl|Mm7|chr2 (127309949-127309380)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               221-1200, gnl|bosTau2|chr18 (40324486-40323501)
               


               
               234-1196, gnl|bosTau2|chr18 (44154293-44153320)
               

               
               234-1196, gnl|Mm7|chr7 (24898383-24897391)
               


               
               383-1183, gnl|bosTau2|chr14 (25783569-25784396)
               

               
               383-1183, gnl|Hg17|chr19 (49043426-49044253)
               

               
               383-1183, gnl|Mm7|chr7 (24898315-24897488)
               


               
               388-1180, gnl|bosTau2|chr14 (25783742-25784561)
               

               
               388-1180, gnl|Hg17|chr19 (49043599-49044418)
               

               
               388-1180, gnl|Mm7|chr7 (24898142-24897323)
               


               
               404-1012, gnl|bosTau2|chr10 (8996518-8995893)
               

               
               404-1012, gnl|Mm7|chr2 (127309949-127309380)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               liv (0.146284)
               

               
               ste (0.135208)
               

               
               bla (0.124347)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               bla (0.124347)

	221-1200, gnl\|bosTau2\|chr18 (40324486-40323501)

	234-1196, gnl\|bosTau2\|chr18 (44154293-44153320)
	234-1196, gnl\|Mm7\|chr7 (24898383-24897391)

	383-1183, gnl\|bosTau2\|chr14 (25783569-25784396)
	383-1183, gnl\|Hg17\|chr19 (49043426-49044253)
	383-1183, gnl\|Mm7\|chr7 (24898315-24897488)

	388-1180, gnl\|bosTau2\|chr14 (25783742-25784561)
	388-1180, gnl\|Hg17\|chr19 (49043599-49044418)
	388-1180, gnl\|Mm7\|chr7 (24898142-24897323)

	404-1012, gnl\|bosTau2\|chr10 (8996518-8995893)
	404-1012, gnl\|Mm7\|chr2 (127309949-127309380)