Non-Coding RNA Search

Ss1.1-rste18_d19.5

Sequence:


               
               TGAAGTCACGTTTTCCTTCTTGGTTGCTGCACAACCTATTGGATGTTCACGGAGAAGCTC
TGTTCTTTGTGTTAACAGCTGTGTCCCTTTGCTTCTCCTTCTGCTTTTCTCTCTTCCACA
GTTGAGGCTGGGTGTATTCTTTCAAAGAAATAGCCGTGAATGTGCTTTCCTAAATAATTG
AGAGTTCTTTCTGCCTCTTGAAGGAACTCGCGGGAGAGGCCCTTCTATCTGCACGAGCAT
TTAGCTTGTTCAGATCTCTGCATTTTATAAATGCTTCCTACTAAGAAAGCATTTTTTAAG
TCACTGCTTGTACCAGGTAATTTTTGCTGGGGACGGGAAAGGGTTGGGGTTTTTTGGTGG
GAGAGGGGTGGGTGGGTATTTTCTGTTGACGCTTTATGTGCAGGTGTGTTCCGAGGCAAT
AACAAGTTGCTGTGAAAACAGCATGTGCTGCTGCCTTTGTAACTGCATGGAAACGTCTCA
CCTGGGTTTTTCTCTAGGTTAATGCAGAAATGTGTAAACTGGGAGATGCAGATGTAATAT
TTTTTTAATAGTTCATGAAATTAAGTTATTAAAAACAAAAATAACGTGAGATTTAACTAC
CTGAATGCTATATAATTGTAGATTACTCTTGTTTTACAAACCTTTAAAATGCATTTTAGG
AAGTCAAAATTGATATGCTTAATAAAAGCTTTCTTAAAGTCCCATACCTTTGGACCATGG
CAGCTAATTTTGTAATTTAAGCATTCATATGAACTACCTATGGACATATATTAAATTAAT
TGACAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGTCACGTTTTCCTTCTTGGTTGCTGCACAACCTATTGGATGTTCACGGAGAAGCTC
TGTTCTTTGTGTTAACAGCTGTGTCCCTTTGCTTCTCCTTCTGCTTTTCTCTCTTCCACA
GTTGAGGCTGGGTGTATTCTTTCAAAGAAATAGCCGTGAATGTGCTTTCCTAAATAATTG
AGAGTTCTTTCTGCCTCTTGAAGGAACTCGCGGGAGAGGCCCTTCTATCTGCACGAGCAT
TTAGCTTGTTCAGATCTCTGCATTTTATAAATGCTTCCTACTAAGAAAGCATTTTTTAAG
TCACTGCTTGTACCAGGTAATTTTTGCTGGGGACGGGAAAGGGTTGGGGTTTTTTGGTGG
GAGAGGGGTGGGTGGGTATTTTCTGTTGACGCTTTATGTGCAGGTGTGTTCCGAGGCAAT
AACAAGTTGCTGTGAAAACAGCATGTGCTGCTGCCTTTGTAACTGCATGGAAACGTCTCA
CCTGGGTTTTTCTCTAGGTTAATGCAGAAATGTGTAAACTGGGAGATGCAGATGTAATAT
TTTTTTAATAGTTCATGAAATTAAGTTATTAAAAACAAAAATAACGTGAGATTTAACTAC
CTGAATGCTATATAATTGTAGATTACTCTTGTTTTACAAACCTTTAAAATGCATTTTAGG
AAGTCAAAATTGATATGCTTAATAAAAGCTTTCTTAAAGTCCCATACCTTTGGACCATGG
CAGCTAATTTTGTAATTTAAGCATTCATATGAACTACCTATGGACATATATTAAATTAAT
TGACAAAAAAAA

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               160-739, gnl|bosTau2|chr19 (40436614-40436030)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               160-739, gnl|bosTau2|chr19 (40436614-40436030)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cte (0.29274)
               

               
               sag (0.182715)
               

               
               ste (0.135208)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               sag (0.182715)
               

               
               ste (0.135208)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	cte (0.29274)
	sag (0.182715)
	ste (0.135208)
	ebs (0.118301)
	jej (0.0989218)
	ldo (0.0970026)