Non-Coding RNA Search

Ss1.1-rste18_k5.5

Sequence:


               
               CTGGATTCTAGTGACATTTACAATGAATTGAAAGAAACGTATCCGAATTATCTTCCTCTC
TATGTTGCACGACTTCATCAGTTGGATGCTGAAAAGGAACGAATGAAAAGACTTAATGAA
ATCGTTGAAGCTGCAAATGCTGTTATTTCTCACATAGATCAAACGGCCCTAGCAGTTTAT
ATTGCGATGAAGACTGACCCCAGGCCTGATGCAGCTATTATAAAAAATGACATGGACAAG
CAGAAGTCGACGCTCGTGGACGCCCTCTGTCGGAAAGGCTGCGCCCTGGCCGACCACCTC
CTCCAGGCCCAGGAGCAGGAGGGGGCTGTGTCGAGCGATGCGGAAGGGAGAGAGGAGGAG
GGCGAGGGCACCCTGGACTCCCTGACGGAAACCTTCTGGGAGACCACCAAGTGGACCGAC
CTTTTTGACAGCAAGGTTTTGACATTTGCATACAAGCATGCATTGGTAAATAAAATGTAT
GGGAGAGGCCTTAAATTTGCAACTAAACTTGTGGAGGAAAAACCAACAAAAGAAAACTGG
AAAAATTGTATTCAACTGATGAAGCTACTTGGATGGACCCATTGTGCATCTTTTACTGAA
AACTGGCTCCCCATCATGTATCCTCCTGATTATTGTGTATTCTAAAATAGGAAACAAGAC
TTTAAATTTTAAAAAAGAAAGTTTTATAGTGAACAAATATATGAACAAATGTGTGGCATT
TCTAGTCTAACTAATGCATGTCTTCATCCACTATCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGATTCTAGTGACATTTACAATGAATTGAAAGAAACGTATCCGAATTATCTTCCTCTC
TATGTTGCACGACTTCATCAGTTGGATGCTGAAAAGGAACGAATGAAAAGACTTAATGAA
ATCGTTGAAGCTGCAAATGCTGTTATTTCTCACATAGATCAAACGGCCCTAGCAGTTTAT
ATTGCGATGAAGACTGACCCCAGGCCTGATGCAGCTATTATAAAAAATGACATGGACAAG
CAGAAGTCGACGCTCGTGGACGCCCTCTGTCGGAAAGGCTGCGCCCTGGCCGACCACCTC
CTCCAGGCCCAGGAGCAGGAGGGGGCTGTGTCGAGCGATGCGGAAGGGAGAGAGGAGGAG
GGCGAGGGCACCCTGGACTCCCTGACGGAAACCTTCTGGGAGACCACCAAGTGGACCGAC
CTTTTTGACAGCAAGGTTTTGACATTTGCATACAAGCATGCATTGGTAAATAAAATGTAT
GGGAGAGGCCTTAAATTTGCAACTAAACTTGTGGAGGAAAAACCAACAAAAGAAAACTGG
AAAAATTGTATTCAACTGATGAAGCTACTTGGATGGACCCATTGTGCATCTTTTACTGAA
AACTGGCTCCCCATCATGTATCCTCCTGATTATTGTGTATTCTAAAATAGGAAACAAGAC
TTTAAATTTTAAAAAAGAAAGTTTTATAGTGAACAAATATATGAACAAATGTGTGGCATT
TCTAGTCTAACTAATGCATGTCTTCATCCACTATCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55661756|emb|CAH72180.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55661756|emb|CAH72180.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               95-227, gnl|bosTau2|chr12 (41125623-41125491)
               

               
               95-227, gnl|Hg17|chr13 (102115144-102115276)
               

               
               95-227, gnl|Mm7|chr1 (44232649-44232781)
               


               
               228-437, gnl|bosTau2|chr12 (41122318-41122109)
               

               
               228-437, gnl|Hg17|chr13 (102124634-102124843)
               

               
               228-437, gnl|Mm7|chr1 (44240015-44240224)
               


               
               546-755, gnl|bosTau2|chr12 (41118054-41117848)
               

               
               546-755, gnl|Hg17|chr13 (102128567-102128773)
               

               
               546-755, gnl|Mm7|chr1 (44242480-44242690)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-227, gnl|bosTau2|chr12 (41125623-41125491)
               

               
               95-227, gnl|Hg17|chr13 (102115144-102115276)
               

               
               95-227, gnl|Mm7|chr1 (44232649-44232781)
               


               
               228-437, gnl|bosTau2|chr12 (41122318-41122109)
               

               
               228-437, gnl|Hg17|chr13 (102124634-102124843)
               

               
               228-437, gnl|Mm7|chr1 (44240015-44240224)
               


               
               546-755, gnl|bosTau2|chr12 (41118054-41117848)
               

               
               546-755, gnl|Hg17|chr13 (102128567-102128773)
               

               
               546-755, gnl|Mm7|chr1 (44242480-44242690)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cte (0.29274)
               

               
               spc (0.226732)
               

               
               fbs (0.175346)
               

               
               csk (0.140746)
               

               
               ste (0.135208)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               spc (0.226732)
               

               
               fbs (0.175346)
               

               
               csk (0.140746)
               

               
               ste (0.135208)

	95-227, gnl\|bosTau2\|chr12 (41125623-41125491)
	95-227, gnl\|Hg17\|chr13 (102115144-102115276)
	95-227, gnl\|Mm7\|chr1 (44232649-44232781)

	228-437, gnl\|bosTau2\|chr12 (41122318-41122109)
	228-437, gnl\|Hg17\|chr13 (102124634-102124843)
	228-437, gnl\|Mm7\|chr1 (44240015-44240224)

	546-755, gnl\|bosTau2\|chr12 (41118054-41117848)
	546-755, gnl\|Hg17\|chr13 (102128567-102128773)
	546-755, gnl\|Mm7\|chr1 (44242480-44242690)

	cte (0.29274)
	spc (0.226732)
	fbs (0.175346)
	csk (0.140746)
	ste (0.135208)