Non-Coding RNA Search

Ss1.1-rste18_m5.5

Sequence:


               
               GTGTTGTCTTGGGAGGCTGTGGTGGCTGGAGCGTCCATTAAATCTGGGATCTTTTTTAAA
GGTAAACGTGCCTGTCTTGGGAGGCTGTGGTGGCTGGAGCGTCCATTAAATCTGGGATCT
TTTTTAAAGGCCATGGGCGATCAGGAACTACCTGGAGTTTTGGTGTCTGGATTTGAAGGA
CCATATAGCATATGTGAAGATCATGTTGGAGTTCTGCAGAAACACTTTAATCTCATTACT
ATGCAAGAGTTTTTGGAAAATAAAACACACTTTGGTCCGAAGATCCAAGCTATATACCTC
TGGGCTGGAAAGCCACACATCAACCAGGAGCTCCTGCAGAGCCTGCCCTCCTTGCGGGTC
ATCGCCAGCTCAGGGGTAGGGCTGGACCACCTGGACCTGAAGCTCATTGACAGCTTTGGT
GTGAAGGTGGCCAACACACCCCATGCTGTTGCCAACCCCACAGCAGACCTGGGGATGGCC
TTGCTGTTGGCCGTAGCTCGGAGAGTTGTGGAAGGTCATCAGCTGGCTATTTCACCACAT
ACGGAGAATTTTTCTGCAAATTGGTTGGGTGAAGAAGTGACGGGGGCCACTCTGGGAATT
ATCGGCATGGGCAGCATTGGCTATAAAATTGCTCAGAGGGCCAGAGCATTTGAAATGAAG
ATTCTCTATCACAATAGAAAACGCAGGAGCTTGGAGGAGGAGGAAGCTGTTGGGGCCACT
TACTGTGAGAGGCTGGATGACTTGCTTCAGCAATCGGACTTTGTGATGTTAGCAGTGAAC
CTGACACCCCAGTCCCAAGGGCTGATTGGGAGGAGGGAGCTAAGTTTGATGAAGCCCACT
GCCACTCTCATCAACGTGGGCAGAGGTCTGTTAGTTGATCAAGATGCCCTGGTGGAAGCC
CTTCAGACTGGAGTCATTAAAGCTGCGGCACTGGATGTGACATACCCAGAGCCCCTGCCC
AGAGATCATCCTTTGTTAGAGTTGAAGAACGTCACTCTGACACCTCACATTGGAAGTGCA
ACCCATCAAGCAAGACGACAGATGATGGAAAATTTGGTTGAAAGCATCCTGGCTTCTCTC
AGTGGCCTTCCTATTCCTAATGAAGTGCTACTTAAATGATTTCTGTGGGTTGGAAATTCA
GTGGGATGATAACATGACAGATTTAATGGCGGGAAAATAAGTATTTTGTGCACTTTATGT
TGCAGTTCATTATATAGATTGGATTAATACTACTTACATGGAAAACTTAAAGAATAGTAA
TAATAGTTACCATTATCATTTATAATGAAACAGCAGAGAGGATTACTTGCCTAATTTCCA
AAAACCTGCACTAGGTCTGTGGATTGCTTGGTGAGCTATGTTGCTTTCAATCCTGATAAA
TTTTGATTGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTTGTCTTGGGAGGCTGTGGTGGCTGGAGCGTCCATTAAATCTGGGATCTTTTTTAAA
GGTAAACGTGCCTGTCTTGGGAGGCTGTGGTGGCTGGAGCGTCCATTAAATCTGGGATCT
TTTTTAAAGGCCATGGGCGATCAGGAACTACCTGGAGTTTTGGTGTCTGGATTTGAAGGA
CCATATAGCATATGTGAAGATCATGTTGGAGTTCTGCAGAAACACTTTAATCTCATTACT
ATGCAAGAGTTTTTGGAAAATAAAACACACTTTGGTCCGAAGATCCAAGCTATATACCTC
TGGGCTGGAAAGCCACACATCAACCAGGAGCTCCTGCAGAGCCTGCCCTCCTTGCGGGTC
ATCGCCAGCTCAGGGGTAGGGCTGGACCACCTGGACCTGAAGCTCATTGACAGCTTTGGT
GTGAAGGTGGCCAACACACCCCATGCTGTTGCCAACCCCACAGCAGACCTGGGGATGGCC
TTGCTGTTGGCCGTAGCTCGGAGAGTTGTGGAAGGTCATCAGCTGGCTATTTCACCACAT
ACGGAGAATTTTTCTGCAAATTGGTTGGGTGAAGAAGTGACGGGGGCCACTCTGGGAATT
ATCGGCATGGGCAGCATTGGCTATAAAATTGCTCAGAGGGCCAGAGCATTTGAAATGAAG
ATTCTCTATCACAATAGAAAACGCAGGAGCTTGGAGGAGGAGGAAGCTGTTGGGGCCACT
TACTGTGAGAGGCTGGATGACTTGCTTCAGCAATCGGACTTTGTGATGTTAGCAGTGAAC
CTGACACCCCAGTCCCAAGGGCTGATTGGGAGGAGGGAGCTAAGTTTGATGAAGCCCACT
GCCACTCTCATCAACGTGGGCAGAGGTCTGTTAGTTGATCAAGATGCCCTGGTGGAAGCC
CTTCAGACTGGAGTCATTAAAGCTGCGGCACTGGATGTGACATACCCAGAGCCCCTGCCC
AGAGATCATCCTTTGTTAGAGTTGAAGAACGTCACTCTGACACCTCACATTGGAAGTGCA
ACCCATCAAGCAAGACGACAGATGATGGAAAATTTGGTTGAAAGCATCCTGGCTTCTCTC
AGTGGCCTTCCTATTCCTAATGAAGTGCTACTTAAATGATTTCTGTGGGTTGGAAATTCA
GTGGGATGATAACATGACAGATTTAATGGCGGGAAAATAAGTATTTTGTGCACTTTATGT
TGCAGTTCATTATATAGATTGGATTAATACTACTTACATGGAAAACTTAAAGAATAGTAA
TAATAGTTACCATTATCATTTATAATGAAACAGCAGAGAGGATTACTTGCCTAATTTCCA
AAAACCTGCACTAGGTCTGTGGATTGCTTGGTGAGCTATGTTGCTTTCAATCCTGATAAA
TTTTGATTGTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61879773|ref|XP_593619.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61879773|ref|XP_593619.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-523, + strand, RNAz p=0.975178

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-523, + strand, RNAz p=0.975178

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               121-523, gnl|bosTau2|chr24 (5716655-5717057)
               


               
               691-867, gnl|bosTau2|chr24 (5719558-5719734)
               


               
               960-1272, gnl|bosTau2|chr24 (5725859-5726163)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               121-523, gnl|bosTau2|chr24 (5716655-5717057)
               


               
               691-867, gnl|bosTau2|chr24 (5719558-5719734)
               


               
               960-1272, gnl|bosTau2|chr24 (5725859-5726163)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               ste (0.405625)
               

               
               sin (0.349895)
               

               
               bfe (0.299715)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               isp (0.150376)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.405625)
               

               
               sin (0.349895)
               

               
               bfe (0.299715)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               isp (0.150376)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)

	121-523, gnl\|bosTau2\|chr24 (5716655-5717057)

	691-867, gnl\|bosTau2\|chr24 (5719558-5719734)

	960-1272, gnl\|bosTau2\|chr24 (5725859-5726163)

	ste (0.405625)
	sin (0.349895)
	bfe (0.299715)
	cbe (0.239234)
	hea (0.204499)
	ldo (0.194005)
	ill (0.175593)
	duo (0.172801)
	cut (0.169924)
	cki (0.165235)
	isp (0.150376)
	ssp (0.13552)
	kid (0.129735)