Non-Coding RNA Search

Ss1.1-rste18_n16.5

Sequence:


               
               AATTCTATAGTGGTTGCCATAAAAGGAAGTCCTAGGTATTGACAGTAGATGCCTCTTGTA
ACTATGGCTTTCTTAAAACTATAATCCTAGCAGAGGACATCAGATATCGTGTAGTCGTTA
GCAAGATCATCATAGGCAAACATATATCCGTTTCAAGGCTAAAAGTGACCTTAACTGTAT
TTATTCTCAAAGGGAAAGGAAATATCAGATGTTTATTTGGTTATAGAATGCTTTTTTTGG
GGGGGGGAGCGTCCATTTCCTGCTGTGTTGAGTATTTTTGCTTCAACAGTATTGCCAGGT
TCCTAAAATTTGTCTAAAAGACACGATTTGGCTTCCTCGTCAAATCTTCAGGCTTCCATT
TCTGCAGCAAATCTTCAGGCTTCCATTTCTGCAGCAGCGCTGTACCATGCACCTGGTTCC
TCTACAGTGACAGTGTGCAATTTCTAATTATTGGACTGTGCCCTATTTTTAGTTTTCAAA
GCAGTTTCTAATTCTGGTGAATGTGTGATGTCAAAGAGGTGCTATATGATGGTCATGCAG
TTAATGCTTACTATTGAATCAATACACAGAACTTGATTGGATTCACTCTGTGCGTGCTAG
TGCTCTAAAAGTAGCCATATTATTAAATTGCCCCCAGATTAACCCCGTAGGCTTAAAATA
CTCATTTTTTTAAGACAAGTACTGCTTCCCATTGCAGGGTCCTCTCCTTATGATAAATGC
ACCCGTGTAGACTGCATTCAAGGTTACCTGAAGTAGAGAGGTCATGAACTTTGAGAATGG
GCTTCCTTTTTGGTTCAGTATTAGTGAGAGGGAGATGGATGGTGGGAGGGTAGGTATTAG
AGTCTTTCATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTCTATAGTGGTTGCCATAAAAGGAAGTCCTAGGTATTGACAGTAGATGCCTCTTGTA
ACTATGGCTTTCTTAAAACTATAATCCTAGCAGAGGACATCAGATATCGTGTAGTCGTTA
GCAAGATCATCATAGGCAAACATATATCCGTTTCAAGGCTAAAAGTGACCTTAACTGTAT
TTATTCTCAAAGGGAAAGGAAATATCAGATGTTTATTTGGTTATAGAATGCTTTTTTTGG
GGGGGGGAGCGTCCATTTCCTGCTGTGTTGAGTATTTTTGCTTCAACAGTATTGCCAGGT
TCCTAAAATTTGTCTAAAAGACACGATTTGGCTTCCTCGTCAAATCTTCAGGCTTCCATT
TCTGCAGCAAATCTTCAGGCTTCCATTTCTGCAGCAGCGCTGTACCATGCACCTGGTTCC
TCTACAGTGACAGTGTGCAATTTCTAATTATTGGACTGTGCCCTATTTTTAGTTTTCAAA
GCAGTTTCTAATTCTGGTGAATGTGTGATGTCAAAGAGGTGCTATATGATGGTCATGCAG
TTAATGCTTACTATTGAATCAATACACAGAACTTGATTGGATTCACTCTGTGCGTGCTAG
TGCTCTAAAAGTAGCCATATTATTAAATTGCCCCCAGATTAACCCCGTAGGCTTAAAATA
CTCATTTTTTTAAGACAAGTACTGCTTCCCATTGCAGGGTCCTCTCCTTATGATAAATGC
ACCCGTGTAGACTGCATTCAAGGTTACCTGAAGTAGAGAGGTCATGAACTTTGAGAATGG
GCTTCCTTTTTGGTTCAGTATTAGTGAGAGGGAGATGGATGGTGGGAGGGTAGGTATTAG
AGTCTTTCATAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               253-370, + strand, RNAz p=0.994315

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               253-370, + strand, RNAz p=0.994315

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-370, gnl|bosTau2|chr25 (8032352-8031989)
               

               
               1-370, gnl|canFam2|chr6 (36168430-36167790)
               

               
               1-370, gnl|danRer3|chr8 (31535698-31536212)
               

               
               1-370, gnl|dasNov1|scaffold_15508 (4153-3512)
               

               
               1-370, gnl|echTel1|scaffold_287462 (29790-30405)
               

               
               1-370, gnl|galGal2|chr14 (12036825-12036240)
               

               
               1-370, gnl|hg17|chr16 (9118277-9118870)
               

               
               1-370, gnl|Hg17|chr16 (9118388-9118729)
               

               
               1-370, gnl|loxAfr1|scaffold_14787 (29291-29907)
               

               
               1-370, gnl|mm7|chr16 (8528422-8529040)
               

               
               1-370, gnl|Mm7|chr16 (8528533-8528898)
               

               
               1-370, gnl|monDom2|scaffold_17 (36643234-36642640)
               

               
               1-370, gnl|oryCun1|scaffold_176080 (45554-44942)
               

               
               1-370, gnl|panTro1|chr18 (9258788-9259382)
               

               
               1-370, gnl|rheMac2|chr20 (9269548-9270142)
               

               
               1-370, gnl|rn3|chr10 (6783957-6783344)
               

               
               1-370, gnl|xenTro1|scaffold_253 (1300661-1301248)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-370, gnl|bosTau2|chr25 (8032352-8031989)
               

               
               1-370, gnl|canFam2|chr6 (36168430-36167790)
               

               
               1-370, gnl|danRer3|chr8 (31535698-31536212)
               

               
               1-370, gnl|dasNov1|scaffold_15508 (4153-3512)
               

               
               1-370, gnl|echTel1|scaffold_287462 (29790-30405)
               

               
               1-370, gnl|galGal2|chr14 (12036825-12036240)
               

               
               1-370, gnl|hg17|chr16 (9118277-9118870)
               

               
               1-370, gnl|Hg17|chr16 (9118388-9118729)
               

               
               1-370, gnl|loxAfr1|scaffold_14787 (29291-29907)
               

               
               1-370, gnl|mm7|chr16 (8528422-8529040)
               

               
               1-370, gnl|Mm7|chr16 (8528533-8528898)
               

               
               1-370, gnl|monDom2|scaffold_17 (36643234-36642640)
               

               
               1-370, gnl|oryCun1|scaffold_176080 (45554-44942)
               

               
               1-370, gnl|panTro1|chr18 (9258788-9259382)
               

               
               1-370, gnl|rheMac2|chr20 (9269548-9270142)
               

               
               1-370, gnl|rn3|chr10 (6783957-6783344)
               

               
               1-370, gnl|xenTro1|scaffold_253 (1300661-1301248)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               cbl (0.229595)
               

               
               fbs (0.175346)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               fbs (0.175346)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               spc (0.113366)

	1-370, gnl\|bosTau2\|chr25 (8032352-8031989)
	1-370, gnl\|canFam2\|chr6 (36168430-36167790)
	1-370, gnl\|danRer3\|chr8 (31535698-31536212)
	1-370, gnl\|dasNov1\|scaffold_15508 (4153-3512)
	1-370, gnl\|echTel1\|scaffold_287462 (29790-30405)
	1-370, gnl\|galGal2\|chr14 (12036825-12036240)
	1-370, gnl\|hg17\|chr16 (9118277-9118870)
	1-370, gnl\|Hg17\|chr16 (9118388-9118729)
	1-370, gnl\|loxAfr1\|scaffold_14787 (29291-29907)
	1-370, gnl\|mm7\|chr16 (8528422-8529040)
	1-370, gnl\|Mm7\|chr16 (8528533-8528898)
	1-370, gnl\|monDom2\|scaffold_17 (36643234-36642640)
	1-370, gnl\|oryCun1\|scaffold_176080 (45554-44942)
	1-370, gnl\|panTro1\|chr18 (9258788-9259382)
	1-370, gnl\|rheMac2\|chr20 (9269548-9270142)
	1-370, gnl\|rn3\|chr10 (6783957-6783344)
	1-370, gnl\|xenTro1\|scaffold_253 (1300661-1301248)

	cbl (0.229595)
	fbs (0.175346)
	ste (0.135208)
	pla (0.133672)
	spc (0.113366)